| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,260,617 – 14,260,762 |
| Length | 145 |
| Max. P | 0.809568 |
| Location | 14,260,617 – 14,260,762 |
|---|---|
| Length | 145 |
| Sequences | 4 |
| Columns | 159 |
| Reading direction | forward |
| Mean pairwise identity | 63.01 |
| Shannon entropy | 0.57640 |
| G+C content | 0.61404 |
| Mean single sequence MFE | -49.69 |
| Consensus MFE | -21.51 |
| Energy contribution | -27.45 |
| Covariance contribution | 5.94 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.809568 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14260617 145 + 21146708 GACACACAAACACAGGAAGCUCAGGAAGUGGGCGCCGAGUUGGGGGUGUGGCACUCAGUGAUGGGAAGGAGCAGUAGA--------------GCAGGGGCGUGGGGGGGUUGUGUGUGUGUGCGGGAAGGACACGCACGUCCUGGGCCCAAGGGUGCUC ..(((((.(((...((..(((((.....))))).))..)))....)))))((((((..............((......--------------))..((((.(((((......(((((((((.(.....).)))))))))))))).))))..)))))).. ( -54.60, z-score = -1.34, R) >droAna3.scaffold_13266 15604808 119 - 19884421 --------------------------GACACACACACACACACACAUCCAUCCUUCUUGUGUAGAUAGAGGAUAAAGA--------------UGAAGAGGAAGAGGGAGAGAGGGGUGGGGGGGAAAAGGACACGCAUGUCCUGGGCCCAAGGGUGCUC --------------------------..............(((.(((((.((((((((.(..................--------------......).)))))))).....)))))...(((...((((((....))))))...)))....)))... ( -31.86, z-score = -0.01, R) >droSec1.super_1 11735630 158 + 14215200 GACACACAAACACGGGAAGCUCAGGAAGUGGGCGCCGAGUUGGGGGUGUGGCACUCAGUGAUGGAAAGGAGCAGGGAGCAGGAGGGAGGGGGGGGGGGGGGUGCGUGAGG-GAGUGUGUGUACGGAAAGGACACGCACGUCCUGGGCCCAAGGGUGCUC ..(((((.(((.(((...(((((.....))))).))).)))....)))))((((((.((..(....)...)).(((..(((((....................(....).-..((((((((.(.....).)))))))).)))))..)))..)))))).. ( -56.80, z-score = -2.73, R) >droSim1.chr2R 12982189 144 + 19596830 GACACACAAACACGGGAAGCUCAGGAAGUGGGCGCCGAGUUGGGGGUGUGGCAUUCUGUGAUGGGAAGCAGUAAGCAG--------------GGGAGGGGGUGCGUGGGG-GAGUGUGUGUGCGGAAAGGACACGCACGUCCUGGGCCCAAGGGUGCUC ..(((((.(((.(((...(((((.....))))).))).)))....)))))(((((((..........((.....))..--------------......((((.(...(((-..((((((((.(.....).))))))))..)))).)))).))))))).. ( -55.50, z-score = -2.27, R) >consensus GACACACAAACACGGGAAGCUCAGGAAGUGGGCGCCGAGUUGGGGGUGUGGCACUCAGUGAUGGAAAGGAGCAAGAAA______________GGAAGGGGGUGCGGGAGG_GAGUGUGUGUGCGGAAAGGACACGCACGUCCUGGGCCCAAGGGUGCUC ..(((((.(((.(((...(((((.....))))).))).)))....)))))((((((..((...........)).........................((((.(((((.....((((((((.(.....).)))))))).))))).))))..)))))).. (-21.51 = -27.45 + 5.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:57 2011