| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,260,084 – 14,260,151 |
| Length | 67 |
| Max. P | 0.911147 |
| Location | 14,260,084 – 14,260,151 |
|---|---|
| Length | 67 |
| Sequences | 3 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 79.68 |
| Shannon entropy | 0.26041 |
| G+C content | 0.34188 |
| Mean single sequence MFE | -6.03 |
| Consensus MFE | -5.37 |
| Energy contribution | -5.70 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.22 |
| SVM RNA-class probability | 0.911147 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14260084 67 + 21146708 CAUCUCCCAUGGAACUAUUACAUUUGUCAUCCCUAUAAAUGUUUGAAAACGCAUUUGCCCCCUACUC ..........((.......((((((((.......))))))))........((....))..))..... ( -5.50, z-score = -0.25, R) >droSim1.chr2R 12981662 53 + 19596830 --------------CUAUUACAUUUGUAAUCCCUAUAAAUGUUUGAAAAUGCUUUUGCCCACUACUC --------------.....(((((((((.....)))))))))........((....))......... ( -6.20, z-score = -2.53, R) >droSec1.super_1 11735032 53 + 14215200 --------------CUAUUACAUUUGUAAUCCCUAUAAAUGUUUGAAAAUGCAUUUGCUCACUACUC --------------.....(((((((((.....)))))))))........((....))......... ( -6.40, z-score = -1.95, R) >consensus ______________CUAUUACAUUUGUAAUCCCUAUAAAUGUUUGAAAAUGCAUUUGCCCACUACUC ...................(((((((((.....)))))))))........((....))......... ( -5.37 = -5.70 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:56 2011