| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,229,916 – 14,230,005 |
| Length | 89 |
| Max. P | 0.771511 |
| Location | 14,229,916 – 14,230,005 |
|---|---|
| Length | 89 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 63.67 |
| Shannon entropy | 0.64180 |
| G+C content | 0.43168 |
| Mean single sequence MFE | -11.25 |
| Consensus MFE | -5.42 |
| Energy contribution | -5.22 |
| Covariance contribution | -0.20 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.99 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14229916 89 - 21146708 UUCCCGCAUCGCUCCCCACUUCAACGUGCAAUCCCCAAUCCCAUUGCUCGUUUCUGAUUUUCAUUCGCU--UCGAGCAUAUUUGCCUGACU .....(((..((((........((((.(((((..........))))).))))...((.......))...--..)))).....)))...... ( -13.40, z-score = -1.72, R) >droSim1.chr2R 12967288 89 - 19596830 UUCCCGCAUCGCUCCCCACUUCAUCGUGCAAUCCCCAAUACCAUUGCUCGUUUCUGAUUUUCAUUCGCU--UCGAGCAUAUUUGCCUGACU .....(((........(((......)))................((((((....(((.......)))..--.))))))....)))...... ( -12.30, z-score = -1.24, R) >droSec1.super_1 11719233 89 - 14215200 UUCCCGCAUCGCUCCCCACUUCAUCGUGCAAUCCCCAAUACCAUUGCUCGUUUCUGAUUUUCAUUCGCU--UCGAGCAUAUUUGUCUGACU .....(((.((.............)))))...............((((((....(((.......)))..--.))))))............. ( -11.02, z-score = -0.79, R) >droAna3.scaffold_13266 15589545 74 + 19884421 ----------ACUCCUUACCUCACUUGUUAA-----AAUCCCAAUGCUGAUUCCUGAUUUUCAUUCGCU--UCCAGCAUAUUUGCUUGACU ----------................(((((-----.......((((((.....(((.......)))..--..))))))......))))). ( -8.12, z-score = -1.52, R) >droGri2.scaffold_15245 11494497 82 - 18325388 ---------UACAAAUAUCAGUAGCACGUAAUUCCAGUAGAAGUCGCAUGUUUUAACUUUUAAUUUGUUAACUUUGCUUAUACAGCUGGUU ---------.......((((((((((..((((.....(((((((...........)))))))....))))....))))......)))))). ( -11.40, z-score = 0.34, R) >consensus UUCCCGCAUCGCUCCCCACUUCAUCGUGCAAUCCCCAAUACCAUUGCUCGUUUCUGAUUUUCAUUCGCU__UCGAGCAUAUUUGCCUGACU .............................................(((((....(((.......))).....))))).............. ( -5.42 = -5.22 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:55 2011