| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,229,608 – 14,229,764 |
| Length | 156 |
| Max. P | 0.937999 |
| Location | 14,229,608 – 14,229,724 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 89.22 |
| Shannon entropy | 0.19408 |
| G+C content | 0.27598 |
| Mean single sequence MFE | -20.10 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.36 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633607 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14229608 116 - 21146708 UUCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGACUUCGAUAGAAAUCAACCGAGUAAUUAAAUAUAUUAUAGGCAGAGAAAUCGAAUAUAAUAAUAAUGAAAA (((((((((((((((............)))))))).)))....(((.(((....))).)))................(((((((..(.((....)))..)))))))....)))).. ( -18.30, z-score = -1.43, R) >droEre2.scaffold_4845 8450503 116 - 22589142 UCCAAGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGGAAUCACCCAAGUAAUUAAAUAUAUUAUUGGCAGAGAAAUCGAAUGUAAUAAUAACGAAAA ...((((((((((((............)))))))).))))...(((((((....)))))))................((((((((.((((....))...))))))))))....... ( -19.40, z-score = -1.83, R) >droYak2.chr2R 6187879 115 + 21139217 UCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUGGCUUCAAUGAUUUCGAUAUGAAUCAGUCAAGUAAUU-AAUAUAUUAUUGGCAGAGAAAUCGAAUGUAAUAAUAAUGAAAA ...((.(((((((((............))))))))).))....((((((((((....))).(((((.((((.-.....)))))))))...)))))))................... ( -21.90, z-score = -1.78, R) >droSec1.super_1 11718954 110 - 14215200 UCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAAUAUAUUAUUGGCAGCGAAAUCGAGUAUAAUAAAAG------ ...((((((((((((............)))))))).))))...(((((((....)))))))..................((((((....((....))....))))))...------ ( -18.30, z-score = -1.42, R) >droSim1.chr2R 12967003 116 - 19596830 UCCAGGCAUAAAUGGAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCAGCCGGGUAAUUAAAUAUAUUAUUGGCAUCGAAAUCUAAUAUAAUAAUAAUAAAAG .((.(((.......(((((((....((....)).)))))))..(((((((....)))))))))).))..........((((((((.....(....).....))))))))....... ( -22.60, z-score = -2.37, R) >consensus UCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAAUAUAUUAUUGGCAGAGAAAUCGAAUAUAAUAAUAAUGAAAA ...((((((((((((............)))))))).))))....(((((((((....)))..((((.((((.......))))))))....)))))).................... (-15.76 = -15.36 + -0.40)
| Location | 14,229,648 – 14,229,764 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 90.07 |
| Shannon entropy | 0.17474 |
| G+C content | 0.29258 |
| Mean single sequence MFE | -24.54 |
| Consensus MFE | -20.56 |
| Energy contribution | -19.20 |
| Covariance contribution | -1.36 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.937999 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14229648 116 - 21146708 CUCGAUAAGUUAUAUUACUUUAUGUGUUUAUCUGAGUGCAUUCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGACUUCGAUAGAAAUCAACCGAGUAAUUAAAU ((((..((((......))))..((..((((((.((((.((((.((((((((((((............)))))))).)))).)))))))).))))))...))..))))......... ( -26.20, z-score = -2.61, R) >droEre2.scaffold_4845 8450543 113 - 22589142 CUUGAUA-GU--UAUUGUUUUAUGUGUUUAUUUAAGUGUAUCCAAGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGGAAUCACCCAAGUAAUUAAAU .((((.(-((--(((((.(((((...((((((((.((........)).))))))))......))))).))...))))))))))(((((((....)))))))............... ( -19.10, z-score = -1.41, R) >droYak2.chr2R 6187919 113 + 21139217 CUUGAUACGU--UAUGGUUUUAUGUGCUUAUUUAAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUGGCUUCAAUGAUUUCGAUAUGAAUCAGUCAAGUAAUUAAU- ((((((....--..(((....(((..(((....)))..))))))(.(((((((((............))))))))).).....((((((......))))))))))))........- ( -24.90, z-score = -1.76, R) >droSec1.super_1 11718988 116 - 14215200 CUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAAU ((((..((((((((.((.(((((...(((((((..((((......)))))))))))......))))).))..))))))))...(((((((....)))))))..))))......... ( -25.60, z-score = -2.92, R) >droSim1.chr2R 12967043 116 - 19596830 CUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGGAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCAGCCGGGUAAUUAAAU (((((.....(((((......))))).....)))))...((((.(((.......(((((((....((....)).)))))))..(((((((....))))))))))))))........ ( -26.90, z-score = -2.43, R) >consensus CUCGAUAAGUUAUAUUGUUUUAUGUGUUUAUUUGAGUGCAUCCAGGCAUAAAUGAAAGUUAAGUAAAUCAUUUGUAGCUUCAAUGAUUUCGAUAGAAAUCACCCGAGUAAUUAAAU ((((.................(((..(((....)))..)))..((((((((((((............)))))))).))))...(((((((....)))))))..))))......... (-20.56 = -19.20 + -1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:54 2011