| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,200,281 – 3,200,333 |
| Length | 52 |
| Max. P | 0.500000 |
| Location | 3,200,281 – 3,200,333 |
|---|---|
| Length | 52 |
| Sequences | 6 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 85.12 |
| Shannon entropy | 0.27071 |
| G+C content | 0.44833 |
| Mean single sequence MFE | -8.08 |
| Consensus MFE | -6.13 |
| Energy contribution | -6.22 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 3200281 52 - 23011544 ----UCCACCCAUCAAGUAGAUGAGCUCCCAUUUACAUGGCACGCUUCUAAAUUCU ----.....((((...(((((((......)))))))))))................ ( -8.20, z-score = -1.55, R) >droSim1.chr2L 3146772 52 - 22036055 ----CCCACCCAUCAAGUAGAUGAGCUCCCAUUUACAUGGCACGCUUCUAAAUUCU ----.....((((...(((((((......)))))))))))................ ( -8.20, z-score = -1.53, R) >droSec1.super_5 1352566 52 - 5866729 ----CCCACCCAUCAAGUAGAUGAGCUCCCAUUUACAUGGCACGCUUCUAAAUUCU ----.....((((...(((((((......)))))))))))................ ( -8.20, z-score = -1.53, R) >droYak2.chr2L 3196507 52 - 22324452 ----CCCACCCAUCAAGCAGAUGAGCUCCCAUUUAUAUGGCACUCUUCUAAAUUCU ----..............(((.(((...((((....))))..))).)))....... ( -7.80, z-score = -1.32, R) >droEre2.scaffold_4929 3244876 52 - 26641161 ----CCCACCCAUCAAGCAGAUGAGCUCCCAUUUAUAUGGCACUCUUCUAAAUUCU ----..............(((.(((...((((....))))..))).)))....... ( -7.80, z-score = -1.32, R) >droAna3.scaffold_12904 17284 50 + 61084 CCCACACACGCAUUUAGCAGAUGAGUUCCCAUUUGUAUGGCAUACUUCUA------ .........((.....(((((((......)))))))...)).........------ ( -8.30, z-score = -1.14, R) >consensus ____CCCACCCAUCAAGCAGAUGAGCUCCCAUUUACAUGGCACGCUUCUAAAUUCU .........((((...(((((((......)))))))))))................ ( -6.13 = -6.22 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:17 2011