| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,201,712 – 14,201,804 |
| Length | 92 |
| Max. P | 0.610071 |
| Location | 14,201,712 – 14,201,804 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.20 |
| Shannon entropy | 0.17291 |
| G+C content | 0.31678 |
| Mean single sequence MFE | -18.18 |
| Consensus MFE | -15.62 |
| Energy contribution | -16.18 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.610071 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14201712 92 - 21146708 ------GUUGGGAAAAUAUG-UUUUUUGCGAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCCCAAACUAAACAAAAAG ------.((((((.....((-(((((..((((((((((.....))))))))))..).........((.....))))))))))))))............. ( -23.00, z-score = -2.91, R) >droEre2.scaffold_4845 8422802 91 - 22589142 --------CGCAAAAAUAUGUUUUUUUCCGAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCACAAACUAAACAAAAAG --------...........((((((.((((((...)))))).))))))((((((((....(((..((.....)))))...))))))))........... ( -16.50, z-score = -1.46, R) >droYak2.chr2R 6159611 91 + 21139217 --------CGUGAAAAUAUUUUUUUUUCCGAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCGCAAUCUAAACAAAAAG --------.((((............(((((((((((((.....)))))))))).)))........((.....))......))))............... ( -16.20, z-score = -0.84, R) >droSec1.super_1 11691405 98 - 14215200 AAAAAACGAGGGAAAAUAUG-UUUUUUGCCAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCCCAAACUAAACAAAAAG .........((((.....((-(((((..(.((((((((.....)))))))).)..).........((.....))))))))))))............... ( -17.60, z-score = -0.94, R) >droSim1.chr2R 12939424 92 - 19596830 ------UGAGGGAAAAUAUG-UUUUUUGCCAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCCCAAACUAAACAAAAAG ------...((((.....((-(((((..(.((((((((.....)))))))).)..).........((.....))))))))))))............... ( -17.60, z-score = -1.01, R) >consensus ________AGGGAAAAUAUG_UUUUUUGCGAGCAUUUUGGACGAAAAUGUUUGUGAAUUAUUUAAGGGAAAACCAAAGCAUCCCAAACUAAACAAAAAG .........((((...........((..((((((((((.....))))))))))..))........((.....))......))))............... (-15.62 = -16.18 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:51 2011