| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,153,034 – 14,153,144 |
| Length | 110 |
| Max. P | 0.761843 |
| Location | 14,153,034 – 14,153,144 |
|---|---|
| Length | 110 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 88.24 |
| Shannon entropy | 0.24358 |
| G+C content | 0.52004 |
| Mean single sequence MFE | -40.25 |
| Consensus MFE | -25.54 |
| Energy contribution | -25.97 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.761843 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14153034 110 - 21146708 AGGCGUUUGUGAGGC----G---GCGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....)))----)---.)(((.(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)).))) ( -40.60, z-score = -1.98, R) >droPer1.super_4 6832657 113 - 7162766 AGGCGUUUGUGAGGC----GGCAGCGGCGGCGGCUUCCACAUGCGACUCGAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....)))----).)...(((.(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)).))) ( -40.60, z-score = -1.70, R) >dp4.chr3 11428742 113 - 19779522 AGGCGUUUGUGAGGC----GGCAGCGGCGGCGGCUUCCACAUGCGACUCGAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....)))----).)...(((.(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)).))) ( -40.60, z-score = -1.70, R) >droAna3.scaffold_13266 15514177 107 + 19884421 AGGCGUUUGUAAGG----------CGGCGGCGGCUUCUACAUGCGACUCCUGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....))----------)).)((((((((((((...((.....))...)))))))))....(((.((((((.(((..(((....)))..))))))))).))).....))) ( -35.30, z-score = -1.51, R) >droEre2.scaffold_4845 8374388 110 - 22589142 AGGCGUUUGUGAGGC----G---GCGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....)))----)---.)(((.(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)).))) ( -40.60, z-score = -1.98, R) >droYak2.chr2R 6110873 110 + 21139217 AGGCGUUUGUGAGGC----G---GCGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....)))----)---.)(((.(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)).))) ( -40.60, z-score = -1.98, R) >droSim1.chr2R 12889715 107 - 19596830 AGGCGUUUGUGAGG----------CGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(.((((.....))----------)).)((((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).))).....))) ( -37.60, z-score = -1.86, R) >droVir3.scaffold_12875 475913 115 + 20611582 AGGCGUUUGUGAGGCGGCUGCUGCUGGCAUUGGCUUCCACAUGCGAC--GAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUAGCAGUCGAAAUGAUGAGCUGCC .((((((..(.(..(((((((((..(((((((((((((((...(...--..)...))))))))).....((.((....)).))..)))).)).)))))))))...).)..))).))) ( -48.20, z-score = -4.19, R) >droMoj3.scaffold_6496 6048429 115 - 26866924 AGGCGUUUGCCAGGCGGCUGCUGCUGGCAUUGGCUUCCACAUGCGAC--GAGAAGGUGGAAGCCAUAAAUCUUGCCAACAUGAGAAAUGACUUUAGCAGUCGAAAUGAUGAGCUGCC .(((((((..((..(((((((((.(((((.((((((((((...(...--..)...)))))))))).......))))).(((.....)))....)))))))))...))..)))).))) ( -48.80, z-score = -3.93, R) >droGri2.scaffold_15245 11403834 112 - 18325388 AGGCGUUUGUGAGGCG---GCUGCUGGCAUUGGCUUCCACAUGCGAC--GAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUAGCAGUCAAAAUGAUGAGCUGCC .((((((..(.(...(---(((((((.(((((((((((((...(...--..)...))))))))).....((.((....)).))..))))....))))))))....).)..))).))) ( -42.50, z-score = -3.08, R) >droWil1.scaffold_181141 1649577 100 + 5303230 AGGCGUUUGCGAGG----------------CGGCUUCCACAUGAGACUUGAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAAC- ......((((....----------------.(((((((((...............)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..)))).- ( -30.76, z-score = -2.47, R) >droSec1.super_1 11643024 106 - 14215200 AGGCGUUUGUGAGG----------CGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUAGCAUUUGCCAUGAUGAGCAGC- .(.((((.....))----------)).).(((((((((((...(.......)...)))))))))....(((.((((((.(((..(((....)))..))))))))).)))..))...- ( -36.80, z-score = -1.64, R) >consensus AGGCGUUUGUGAGGC____G___GCGGCGGCGGCUUCCACAUGCGACUCCAGAAGGUGGAAGCCAUAAAUCUUGGCAACAUGAGAAAUGACUUUACCAUUUGCCAUGAUGAGCAGCC .(((((((((.(...................(((((((((...(.......)...))))))))).....((.((....)).))......................).)))))).))) (-25.54 = -25.97 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:43 2011