| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,199,844 – 3,199,897 |
| Length | 53 |
| Max. P | 0.806084 |
| Location | 3,199,844 – 3,199,897 |
|---|---|
| Length | 53 |
| Sequences | 7 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 69.98 |
| Shannon entropy | 0.52182 |
| G+C content | 0.50504 |
| Mean single sequence MFE | -13.95 |
| Consensus MFE | -6.79 |
| Energy contribution | -7.21 |
| Covariance contribution | 0.43 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3199844 53 - 23011544 --------AACGUGGAAGUUGUGUUAGUUCCACAGAAGCCGCGUUCC------CCAAUUCUUCUAGC --------(((((((...(((((.......)))))...)))))))..------.............. ( -13.90, z-score = -2.74, R) >droSim1.chr2L 3146343 53 - 22036055 --------AGCGUGGAAGUUAUGUUAGUUCCACAGAAGCCGCGUUCC------CCAAUUCUUCUAGC --------.((((((((.(......).))))))(((((.........------......))))).)) ( -11.16, z-score = -1.61, R) >droSec1.super_5 1352145 53 - 5866729 --------AGCGUGGAAGUUGUGUUAGUUCCACAGCAGCCGCGUUCC------CCAAUUCUCCUAGC --------(((((((..((((((.......))))))..)))))))..------.............. ( -16.50, z-score = -3.64, R) >droYak2.chr2L 3196053 53 - 22324452 --------AGCGUGGAAGUUGUGUUAGUUCCACAGAAGGCGAGUUGC------CCGAUUCUGCCAAC --------...((((((.(......).))))))....((((((((..------..))))).)))... ( -17.20, z-score = -2.44, R) >droEre2.scaffold_4929 3244439 53 - 26641161 --------CGCGUGGAAGUUGUGUUAGUUCCACAGAAGCCGAGUUGC------CCCAUUCUUCUAGC --------.((((((((.(......).))))))(((((..(......------..)...))))).)) ( -11.30, z-score = -0.80, R) >dp4.chr4_group4 5186798 58 + 6586962 --------UAUAUGGCUGUUGUGCUAGUUCCACACAAGUGAACCACCGGCAAACAUGUUCUGUUGG- --------.(((((..(((((((...((((.((....)))))))).)))))..)))))........- ( -11.10, z-score = 0.88, R) >droPer1.super_10 270153 66 - 3432795 ACAAACGGAAUGUGGAAGUUGUGUUAGUUCCACACAAGCGAACCACCGAACGCCAACUUCUGUUGG- ...((((((((((((((.(......).)))))))...(((..........)))....)))))))..- ( -16.50, z-score = -0.56, R) >consensus ________AGCGUGGAAGUUGUGUUAGUUCCACAGAAGCCGAGUUCC______CCAAUUCUGCUAGC ...........((((((.(......).)))))).................................. ( -6.79 = -7.21 + 0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:16 2011