| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,116,872 – 14,116,972 |
| Length | 100 |
| Max. P | 0.859686 |
| Location | 14,116,872 – 14,116,972 |
|---|---|
| Length | 100 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 88.52 |
| Shannon entropy | 0.23232 |
| G+C content | 0.35385 |
| Mean single sequence MFE | -19.43 |
| Consensus MFE | -15.88 |
| Energy contribution | -16.29 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859686 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14116872 100 + 21146708 UUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUUUGGCAAAUAA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -17.60, z-score = -1.43, R) >droSim1.chr2R 12852839 100 + 19596830 UUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUUUGGCAAAUAA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -17.60, z-score = -1.43, R) >droSec1.super_1 11607316 100 + 14215200 UUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUUUGGCAAAUAA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -17.60, z-score = -1.43, R) >droYak2.chr2R 6073035 100 - 21139217 UUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUUUGGCAAAUAA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -17.60, z-score = -1.43, R) >droEre2.scaffold_4845 8337939 100 + 22589142 UUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUUUGGCAAAUAA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -17.60, z-score = -1.43, R) >droAna3.scaffold_13266 15472693 100 - 19884421 AUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUAUGGCAAAUCA---------------- .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))...........---------------- ( -18.20, z-score = -1.49, R) >dp4.chr3 11393146 115 + 19779522 AUUUCAUGCC-CGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGGCACAUUACUGCGGGGCAUAUGGCAAAAAGCAACAACGACAUCCAC .....(((((-(((((((((......((((((((....))))))))........))..)).)))).....(((......))).))))))...((.....))............... ( -19.04, z-score = -0.48, R) >droPer1.super_4 6796696 107 + 7162766 AUUUCAUGCC-CGAAACGAGCCACAAAAAUUAAUGUUAAUUAUUUUGACUUAAACUGACGAUUUCAACAGGCACAUUACUGCGGGGCAUAUGGCAAAAAGCAACAACG-------- .....(((((-(.................((((.(((((.....))))))))).(((..(....)..)))(((......))).))))))...((.....)).......-------- ( -18.20, z-score = -0.56, R) >droWil1.scaffold_181141 1598004 109 - 5303230 AUUUUAUGCCUCGAAACGAGCUACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACUUUACUGCGGGGCAUAUGGCAAAAACAAAAAAAAA------- ....(((((((((....(((......((((((((....))))))))........(((..(....)..)))...))).....)))))))))...................------- ( -19.80, z-score = -2.73, R) >droVir3.scaffold_12875 430033 100 - 20611582 AAUUUAUGCCUCGCAACGAGCUACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGUCACAUUACUGCGGGGCAUAUGGCAAAAAA---------------- ....(((((((((((...........((((((((....)))))))).........((((..........))))......)))))))))))..........---------------- ( -24.70, z-score = -3.80, R) >droMoj3.scaffold_6496 5991828 104 + 26866924 AAUUGAUGCCUCGCAACGAGCUACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACAAUUUCAACAGACGCAUUACUGCGGGGCAAAUAGCAAAAUUCGAA------------ ......(((((((((..((((.....((((((((....))))))))........(((..........)))..)).))..)))))))))................------------ ( -22.00, z-score = -2.39, R) >droGri2.scaffold_15245 11357162 99 + 18325388 UAUUUAUGCCUCGCAACGAUCUACAAAAAUUAAUGUUAAUUAAUUUGACUUAA-CUGACGAUUUCAACAGCCACAUUACUGCGGGGCAUAUGGCGCAAAA---------------- ....(((((((((((...........((((((((....)))))))).......-(((..(....)..))).........)))))))))))..........---------------- ( -23.20, z-score = -3.12, R) >consensus AUUUCAUGCCUCGAAACGAGCCACAAAAAUUAAUGUUAAUUAAUUUGACUUAAACUGACGAUUUCAACAGACACAUUACUGCGGGGCAUAUGGCAAAAAA________________ .....((((((((.............((((((((....))))))))........(((..(....)..)))...........))))))))........................... (-15.88 = -16.29 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:38 2011