| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,110,843 – 14,110,940 |
| Length | 97 |
| Max. P | 0.568981 |
| Location | 14,110,843 – 14,110,940 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 93.87 |
| Shannon entropy | 0.11655 |
| G+C content | 0.45380 |
| Mean single sequence MFE | -23.71 |
| Consensus MFE | -20.82 |
| Energy contribution | -20.57 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.568981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14110843 97 - 21146708 -UCCAGAAAACGAAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGCGGUGAUGU- -.((......(....)......((.((((......)))).....((((((((........(((.....)))........)))))))).))))......- ( -24.29, z-score = -1.46, R) >droSim1.chr2R 12846816 98 - 19596830 UCCCAGAAAACGAAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGCGGUGAUGU- ((((......(....)......((.((((......)))).....((((((((........(((.....)))........)))))))).)))).))...- ( -25.59, z-score = -1.75, R) >droSec1.super_1 11601370 98 - 14215200 UCCCAGAAAACGUAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGCGGUGAUGU- ((((......(....)......((.((((......)))).....((((((((........(((.....)))........)))))))).)))).))...- ( -24.59, z-score = -1.24, R) >droYak2.chr2R 6066764 97 + 21139217 -UCAAGAAAACGAAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUUCAGCGAUGAUGU- -(((......(....)......((.((((......)))).....((((((((........(((.....)))........)))))))).))..)))...- ( -20.59, z-score = -0.95, R) >droEre2.scaffold_4845 8331720 96 - 22589142 -UCCA-AAACCGAAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGCGGUGAUGU- -..((-..((((...(((..((........))..))).......((((((((........(((.....)))........))))))))..))))..)).- ( -25.29, z-score = -1.79, R) >droAna3.scaffold_13266 15466335 98 + 19884421 -UCCAGAAAACGAAAGACUUAGGCAACGAACUUUGUCGCAUAAAGGAAUUGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGUGCUAUUUGA -..((((........(((..((........))..)))((((...((((((((........(((.....)))........)))))))).))))..)))). ( -21.89, z-score = -1.53, R) >consensus _UCCAGAAAACGAAAGACUUAGGCAGCGAACUUUGUCGCAUAAAGGAAUCGGAGACACGAGCAACUUAUGCAAAUAACACCGGUUCCAGCGGUGAUGU_ ..........(....)......((.((((......)))).....((((((((........(((.....)))........)))))))).))......... (-20.82 = -20.57 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:37 2011