| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,048,236 – 14,048,336 |
| Length | 100 |
| Max. P | 0.722987 |
| Location | 14,048,236 – 14,048,336 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.49341 |
| G+C content | 0.39823 |
| Mean single sequence MFE | -28.57 |
| Consensus MFE | -8.87 |
| Energy contribution | -11.43 |
| Covariance contribution | 2.56 |
| Combinations/Pair | 1.39 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14048236 100 - 21146708 CCGCUUUCAAGGCAAGUGGC-UUUGCGCAAGCAGCAAUCGCCACAGGAAAUUAUCUUACAAU-UUCUUUGUCAAUUUGUUGC--CCGUGAAAAAGUGGAUACUU (((((((((.((((((((((-.((((....)))).....)))))((((((((.......)))-)))))..........))))--)..)))..))))))...... ( -32.30, z-score = -3.00, R) >droAna3.scaffold_13266 2792314 99 - 19884421 CUCUGCCUUAGACCAGCGGCAUUUUAGGUUGCUGCAAU--UGUUACUAAUUUAAUAAAUUCUGUGCCACACAAAUUCUUUGU---CGUGAAAAAGUGGAUACUU .((..(..((((...((((((........))))))..(--(((((......))))))..))))...(((((((.....))))---.))).....)..))..... ( -19.40, z-score = -0.27, R) >droEre2.scaffold_4845 8267820 101 - 22589142 CCGCUUUUGAGGCAAGUGGCUUUUGCGCAACCAGCAAUCGCCACAGGAAAUUAUCUUACAAU-UUCUUUGUCAAUUUGUUGC--CCGUGAAAAAGUGGAUACUU ((((((((..((((((((((..((((.......))))..)))))((((((((.......)))-)))))..........))))--).....))))))))...... ( -33.20, z-score = -3.34, R) >droYak2.chr2R 6001241 101 + 21139217 CCGCUUUUGAGGCAAGUGGCUUUUGCGCAAGCAGCAAUCGCCACAGGAAACUAUCUUACAAU-UUCUUUGUCAAUUUGUUGC--CCGUGAAAAAGUGGAUACUU ((((((((..((((((((((..((((.......))))..)))))((....)).....((((.-....)))).......))))--).....))))))))...... ( -32.50, z-score = -2.62, R) >droSec1.super_1 11538043 100 - 14215200 CCGCUUUUAAGGCAAGUGGC-UUUGCGCAACCAGCAAUAGCCACAGGAAAUUAUCUUACAAU-UUCUUUGUCAAUUUGUUGC--CCGUGAAAAAGUGGAUACUU ((((((((..((((((((((-(((((.......)))).))))))((((((((.......)))-)))))..........))))--).....))))))))...... ( -32.30, z-score = -3.44, R) >droSim1.chr2R 12780870 100 - 19596830 CCGCUUUUAAGGCAAGUGGC-UUUGCACAACCAGCAAUAGCCACAGGAAAUUAUCUUACAAU-UUCUUUGUCAAUUUGUUGC--CCGUGAAAAAGUGGAUACUU ((((((((..((((((((((-(((((.......)))).))))))((((((((.......)))-)))))..........))))--).....))))))))...... ( -31.60, z-score = -3.56, R) >droVir3.scaffold_12875 8682541 96 - 20611582 -----CGCUAAAUAAAUGGCAUUUUA-AUGGCUGUAAU--UUGCGUUAAUUUACUAAAUUCUGUGCCAUAAAAAUUCUUUGUUGCCGUGAAAAAGUGGAUACUU -----((((......((((((((((.-(((((.(.(((--(((.((......)))))))))...))))).))))........)))))).....))))....... ( -18.70, z-score = -1.32, R) >consensus CCGCUUUUAAGGCAAGUGGC_UUUGCGCAAGCAGCAAUCGCCACAGGAAAUUAUCUUACAAU_UUCUUUGUCAAUUUGUUGC__CCGUGAAAAAGUGGAUACUU ((((((((...((..(((((..((((.......))))..))))).............((((......))))...............))..))))))))...... ( -8.87 = -11.43 + 2.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:31 2011