| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,036,546 – 14,036,646 |
| Length | 100 |
| Max. P | 0.550659 |
| Location | 14,036,546 – 14,036,646 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 75.38 |
| Shannon entropy | 0.45364 |
| G+C content | 0.46985 |
| Mean single sequence MFE | -24.55 |
| Consensus MFE | -15.95 |
| Energy contribution | -17.32 |
| Covariance contribution | 1.37 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.98 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550659 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14036546 100 - 21146708 GGUCCCAAAACAGCUGCUCCACUGGCGAGGAAUCCAG-AAGAUCACUUUCCCAAAUUGCCUUUCGUAUCUGCCGAUAAUCGCGGCGGUACGAAGGUAAAAC--------- ((..........(((........)))(((..(((...-..)))..)))..))...(((((((.((((.((((((.......)))))))))))))))))...--------- ( -28.50, z-score = -1.48, R) >droSim1.chr2R 12769013 101 - 19596830 GGUCCCAAAACAGCUGCUCCACUGGCGAGGAAUCCAGAAAGUUCUCUUUCCCAAAUUGCCUUUCGUAUCUGCCGAUAAUCGCGGCGCUGCGAAGGUAAAAC--------- (((((.....(((........)))....))).....(((((....)))))))...(((((((.((((..(((((.......))))).)))))))))))...--------- ( -26.90, z-score = -0.80, R) >droSec1.super_1 11526391 101 - 14215200 GGUCCCAAAACAGCUGCUCCACUUGCGAAGAAUCCAGAAAGUUCUCUUUCCCAAAUUGCCUUUCGUAUCUGCCGAUAAUCGCGGCGCUGCGAAGGUAAAAC--------- ((............(((.......))).........(((((....)))))))...(((((((.((((..(((((.......))))).)))))))))))...--------- ( -24.10, z-score = -0.88, R) >droYak2.chr2R 5989503 101 + 21139217 GGUUCCAAAACAGCUGCUCCAUUGGCGAGGAAUCCAGAAAGUUCUCUUUCCGAAAUUACCUUUCGUAUCUGCCGAUAAUCGCGGCGGUGCGAAGGUAAAAC--------- ((((((......(((........)))..))))))..(((((....))))).....(((((((.((((.((((((.......)))))))))))))))))...--------- ( -33.10, z-score = -2.69, R) >droEre2.scaffold_4845 8256178 101 - 22589142 GGUCCCAAAACAGCUGCUCCAUUGGCGAGGAAUCCAUAAAGUCCUCUUUCCUAAAUUGCCUUUCGUAUCUGCCGAUAAUCGCGGCGGUGCGAAGGUAAAGC--------- ((..........(((........)))(((((..........)))))...))....(((((((.((((.((((((.......)))))))))))))))))...--------- ( -30.80, z-score = -1.81, R) >droGri2.scaffold_15245 2072193 110 - 18325388 CGUCGCUUAUCAGUUGGAACACACACAUUAGAAAUAUAUAAAACACUUUAAAAGCUUAUCUCAUCAAUUUUCCAUUAAACGCAAACACUCAAAAUCAAAAUGUAGCCAAU ............(((((...(((.....((....)).................((.........................))..................)))..))))) ( -3.91, z-score = 1.81, R) >consensus GGUCCCAAAACAGCUGCUCCACUGGCGAGGAAUCCAGAAAGUUCUCUUUCCCAAAUUGCCUUUCGUAUCUGCCGAUAAUCGCGGCGGUGCGAAGGUAAAAC_________ ............(((........)))..........(((((....))))).....(((((((.((((((.((((.......)))))))))))))))))............ (-15.95 = -17.32 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:30 2011