| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,190,147 – 3,190,202 |
| Length | 55 |
| Max. P | 0.836532 |
| Location | 3,190,147 – 3,190,202 |
|---|---|
| Length | 55 |
| Sequences | 7 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 76.54 |
| Shannon entropy | 0.46268 |
| G+C content | 0.40546 |
| Mean single sequence MFE | -7.90 |
| Consensus MFE | -3.43 |
| Energy contribution | -3.80 |
| Covariance contribution | 0.37 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.19 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.836532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3190147 55 - 23011544 AAAGCAAUCUGCCUAAUCUCC------GGCAAUUGUCCUGUUCUCCCUUCUUUUUCCAUUA ...(((((.((((........------)))))))))......................... ( -8.20, z-score = -3.38, R) >droSim1.chr2L 3135204 55 - 22036055 AAAGCAAUCUGCCUAAUCUCC------GGCAAUUGUCCUGUUUUCCCUUCUUUUUCCAUUA ...(((((.((((........------)))))))))......................... ( -8.20, z-score = -3.11, R) >droSec1.super_5 1342333 55 - 5866729 AAAGCAAUCUGCCUAAUCUCC------GGCAAUUGUCCUGUUCUCCCUUCUUUUUCCAUUA ...(((((.((((........------)))))))))......................... ( -8.20, z-score = -3.38, R) >droYak2.chr2L 3185993 54 - 22324452 AAAGCAAUCUGCCUAAUCUCC------GGCAAUUGUUCUGUUUUCCC-UGUUUUUCCAUUA ..((((((.((((........------))))))))))..........-............. ( -8.80, z-score = -2.93, R) >droEre2.scaffold_4929 3234482 54 - 26641161 AAAGCAAUCUGCCUAAUCUCC------GGCAAUUGUCCUGUUUUCCC-UGUUUUUCCAUUA ...(((((.((((........------)))))))))...........-............. ( -8.20, z-score = -2.66, R) >droAna3.scaffold_12913 415235 60 - 441482 AGAGCAUUCUGACUAAUCCCUUGCUUGGGAAAAUGUCGUGUUGUCCUCGAUUUUCUCAUU- ((..((...((((...((((......))))....))))...))..)).............- ( -12.00, z-score = -0.96, R) >droPer1.super_10 3014940 54 + 3432795 AGAGCAAUCUGCCUAAUCCCCACUUUAAAUCAUUGUCUUGUUUUGCAUCCUUUG------- (((....)))............................................------- ( -1.70, z-score = 1.06, R) >consensus AAAGCAAUCUGCCUAAUCUCC______GGCAAUUGUCCUGUUUUCCCUUCUUUUUCCAUUA ...(((((.((((..............)))))))))......................... ( -3.43 = -3.80 + 0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:15 2011