| Sequence ID | dm3.chr2R |
|---|---|
| Location | 14,004,730 – 14,004,781 |
| Length | 51 |
| Max. P | 0.963003 |
| Location | 14,004,730 – 14,004,781 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 54.04 |
| Shannon entropy | 0.63285 |
| G+C content | 0.33084 |
| Mean single sequence MFE | -8.27 |
| Consensus MFE | -4.91 |
| Energy contribution | -5.03 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.58 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.72 |
| SVM RNA-class probability | 0.963003 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 14004730 51 + 21146708 AUCGAGCUUCAUAGGAUUGCACUGUUUUAUGAUUUAUCAACUAUACCAAGG---- ...((...(((((((((......)))))))))....)).............---- ( -8.20, z-score = -1.17, R) >droSim1.chr2R 12735537 51 + 19596830 AUUGAGCUUUAUAGGAUAGCACUAUUUUAAGACCUAUCAAAUAUAACAAGC---- .....((((((((.(((((..((......))..)))))...))))..))))---- ( -7.60, z-score = -1.16, R) >droGri2.scaffold_15245 8233534 55 + 18325388 AUGGAAAUUCGAAGAGCUACCAAGCUUAAUAAGCCAUCAAAUUGGUUACAUUAGU .............(((((....)))))....(((((......)))))........ ( -9.00, z-score = -1.06, R) >consensus AUCGAGCUUCAUAGGAUUGCACUGUUUUAUGACCUAUCAAAUAUAACAAGC____ ...((...((((((((((....))))))))))....))................. ( -4.91 = -5.03 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:26 2011