| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,980,489 – 13,980,584 |
| Length | 95 |
| Max. P | 0.519567 |
| Location | 13,980,489 – 13,980,584 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 71.18 |
| Shannon entropy | 0.58577 |
| G+C content | 0.54159 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -15.76 |
| Energy contribution | -15.61 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.62 |
| Mean z-score | -0.61 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.519567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13980489 95 + 21146708 GAGGAACUAUAACUAUGAAUAUGGUUACAGGGGCAAUGAA------CUGCUCCGAGCUCUGCUCUCCGAGCGAA---GCGAGAAACGAGAGGUGAGCUACAUAG- ..(.(((((((........))))))).).((((((.....------.)))))).(((((..(((((....(...---....)....)))))..)))))......- ( -27.00, z-score = -1.52, R) >droSim1.chr2R 12713689 95 + 19596830 GAGGAACUACAACUAUGAAUAUGGUUACAGGGGCAAUGAA------CUGCUCCGAGCUCUGCUCUCCGAGCGAA---GCGAGAAACGAGAGGUGAGCUACAUAG- ............(((((............((((((.....------.)))))).(((((..(((((....(...---....)....)))))..))))).)))))- ( -27.00, z-score = -1.45, R) >droSec1.super_1 11474202 95 + 14215200 GAGGAACUACAACUAUGAAUAUGGUUACAGGGGCAAUGAA------CUGCUCCGAGCUCUGCUCUCCGAGCGAA---GCGAGAAACGAGAGGUGAGCUACAUAG- ............(((((............((((((.....------.)))))).(((((..(((((....(...---....)....)))))..))))).)))))- ( -27.00, z-score = -1.45, R) >droYak2.chr2R 5936463 95 - 21139217 GAGGAACUACAACUACGAAUAUGGUUACAGGGGCAAUGAA------CUGCUCCGAGCUCUGCUCUCCGAGCGCA---GCGAGAAACGAGAGGUGAGCUACGUAA- .............((((............((((((.....------.)))))).(((((..(((((....(...---....)....)))))..))))).)))).- ( -26.20, z-score = -0.37, R) >droEre2.scaffold_4845 8202741 95 + 22589142 GAGGAACUACAACUACGAAUAUGGUUACAGGGGCAAUGAA------CUGCUCCGAGCUCUGCUCUCCGAGCGAA---GCGAGAAACGAGAGGUGAGCUACAUAA- ...................((((......((((((.....------.)))))).(((((..(((((....(...---....)....)))))..))))).)))).- ( -25.20, z-score = -0.92, R) >droAna3.scaffold_13266 9668195 96 - 19884421 CCGGAGUCACAACUACGAGUAUGGCUACAGGGGCAAUGAA------CUGCUCCGGGCCCUGCUCUCCGAAAGAG---GCGAAAAACGAGAGGUGGGCUUAAACAC ...(((((...(((.((((((.((((...((((((.....------.)))))).)))).)))))..(....)..---...........).))).)))))...... ( -31.80, z-score = -1.40, R) >dp4.chr3 6439798 92 + 19779522 GCGGGUUCACAACUAUGACUACGUCUACAGGGGCAACGAU------CUGCUGCGGGCCCUGCUCGCGGAGCGGG---GAGAGAAGCGCGAGGUGGGUCAAA---- ...((..(((............((((....)))).....(------(((((.(...((((((((...)))))))---)...).)))).)).)))..))...---- ( -30.40, z-score = 0.63, R) >droPer1.super_2 6660751 92 + 9036312 GCGGGUUCACAACUAUGACUACGUCUACAGGGGUAACGAA------CUGCUGCGGGCCCUGCUCGCGGAGCGGG---GAGAGAAGCGCGAGGUGGGUCAAA---- ...((..(((........((..(((..(((.(((.....)------)).)))..)))(((((((...)))))))---.)).....(....))))..))...---- ( -29.70, z-score = 0.53, R) >droWil1.scaffold_180745 2552946 100 + 2843958 AAGAAUGCAUAACUAUGAUUAUAGCUAUCGUAGCAAUGAAUUGCCUCUGCUAAGAGCCCUUCUAUCAGAGCGGGGUGGGGAAAAACGUGAGGUAAGUAAC----- .......(((..(((((((.......)))))))..)))..(((((((.((.....(((((.((.....)).)))))..(......)))))))))).....----- ( -23.40, z-score = -0.29, R) >droVir3.scaffold_12875 5498168 96 - 20611582 CAGGCUGCACAACUACGACUACAACUAUCGCAGCAACGAGCUGCCGCUGCUGCGCGCCCUUCUCAACGAGCGUGCCGGUGAGAAGCGUGAGGUGCG--------- ......((((..................(((((((.((......)).)))))))(((.(((((((.((.(....))).))))))).)))..)))).--------- ( -34.20, z-score = 0.21, R) >droGri2.scaffold_15245 8209633 94 + 18325388 CAGGAUGCACAACUAUGACUUCAACUAUCGCAGCAAUGAGCUGCCUCUGCUGCGUGCCCUUCUCAACGAACGGGUCGGUGAGAAGCGUGAGGUG----------- .................(((((......(((((((..(((....)))))))))).((.(((((((.(((.....))).))))))).))))))).----------- ( -30.30, z-score = -0.66, R) >consensus GAGGAACCACAACUAUGAAUAUGGCUACAGGGGCAAUGAA______CUGCUCCGAGCCCUGCUCUCCGAGCGAG___GCGAGAAACGAGAGGUGAGCUACA____ .............................((((((............)))))).(((((..(((((....................)))))..)))))....... (-15.76 = -15.61 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:25 2011