| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,943,138 – 13,943,214 |
| Length | 76 |
| Max. P | 0.642719 |
| Location | 13,943,138 – 13,943,214 |
|---|---|
| Length | 76 |
| Sequences | 7 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 75.38 |
| Shannon entropy | 0.44046 |
| G+C content | 0.43673 |
| Mean single sequence MFE | -21.06 |
| Consensus MFE | -9.41 |
| Energy contribution | -9.79 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642719 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13943138 76 + 21146708 CGUUUGAGUUU-----CCAGAUUGACUUCAUCACUUGAUUC-CAUCUGUU----UAGUUUAAGGAUUGGAGCCAAU-CCUUAAGCCA------ ...........-----.(((((.((..(((.....))).))-.)))))..----..((((((((((((....))))-))))))))..------ ( -23.50, z-score = -3.95, R) >droSim1.chr2R 12681464 76 + 19596830 CGUUUGAGUUC-----CCAGAUUGACUUCAUCACUUGAUUC-CAUCUGUU----UGGUUUCAAGAUUGGAGCCAGU-CCUUAAGCCA------ .(((((((...-----...(((((.(((((...(((((..(-((......----)))..)))))..))))).))))-))))))))..------ ( -24.50, z-score = -3.67, R) >droSec1.super_1 11435796 76 + 14215200 CGUUUGAGUUC-----CCAGAUUGACUUCAUCACUUGAUUC-CAUCUGUU----UGGUUUGAAGAUUGGAGCCAGU-CCUUAAGCCA------ ...........-----.(((((.((..(((.....))).))-.)))))..----((((((((.(((((....))))-).))))))))------ ( -21.20, z-score = -2.20, R) >droYak2.chr2R 5904218 76 - 21139217 CGUUUGAGUUC-----CCAGAUUGACUUCAUCACUUGAUUC-CAUCUGUU----UGGCUUGAAGAUUGCAGCCAGU-CCUUAAGCCA------ ...........-----.(((((.((..(((.....))).))-.)))))..----((((((((.(((((....))))-).))))))))------ ( -21.40, z-score = -2.64, R) >droEre2.scaffold_4845 8171157 82 + 22589142 CGUUUGAGUUC-----CCAGAUUGACUUCAUCACUUGAUUC-CAUCUGUU----UGGUUUGAAGAUUGGAGCCAGU-CCUUAAGCCAUUGCCA ...........-----.(((((.((..(((.....))).))-.)))))..----((((((((.(((((....))))-).))))))))...... ( -21.80, z-score = -1.97, R) >droAna3.scaffold_13266 9638771 75 - 19884421 CGUUUGAGUUU-----UCAGAUUGACUUCAUCACUUGAUGC-CAUUUGUU----UGGUUUUGAGAU-AGAGCCAGG-CUCCAACUCA------ ....((((((.-----............((((....)))).-.....(((----((((((((...)-)))))))))-)...))))))------ ( -17.00, z-score = -0.67, R) >dp4.chr3 6408454 87 + 19779522 UGUUUGUGUUCGUCCCUGAAACACACCUGCUAGUCGGAUUCUCACUUGAUGCAGUGUCCUCACAUUCGGAGUAGAUACCUUGGGGCA------ ...........((((((((...((((.(((..(((((........))))))))))))..))).....((........))..))))).------ ( -18.00, z-score = 1.56, R) >consensus CGUUUGAGUUC_____CCAGAUUGACUUCAUCACUUGAUUC_CAUCUGUU____UGGUUUGAAGAUUGGAGCCAGU_CCUUAAGCCA______ .(((((((.........(((((.....(((.....))).....)))))......((((((........))))))....)))))))........ ( -9.41 = -9.79 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:19 2011