| Sequence ID | dm3.chr2L |
|---|---|
| Location | 3,182,335 – 3,182,428 |
| Length | 93 |
| Max. P | 0.862632 |
| Location | 3,182,335 – 3,182,428 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 76.63 |
| Shannon entropy | 0.38516 |
| G+C content | 0.49527 |
| Mean single sequence MFE | -20.06 |
| Consensus MFE | -15.00 |
| Energy contribution | -15.48 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.862632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 3182335 93 - 23011544 AACUUGGAUAAAACUUGGCGAGGGACUAGUUCCAUUCCCUCGUUUGCCAGCAGUUUCCAUAGUUG--ACCCCGCCCCCCUCCCCCACCCUGUGAA ((((((((...((((((((((((((..........))))))....))))..)))))))).)))).--............................ ( -19.90, z-score = -0.61, R) >droSim1.chr2L 3124810 86 - 22036055 AACUUGGAUAAAACUUGGCGAGGGACUAGUUCCAUUCCCUCGUUUGCCAGUAGUUUCCAUAG--------UUACACCCCCUGCCC-CCUCGUGAA ((((((((.(..(((.(((((((((..........))))))....))))))..).)))).))--------)).(((.........-....))).. ( -20.22, z-score = -1.02, R) >droSec1.super_5 1334595 94 - 5866729 AACUUGGAUAAAACUUUUCGAGGGACUAGUUCCAUUCCCUCGUUUGCCAGUAGUUUCCAUAGCUACCCCCCUACCCCCCUCGCCC-CCUCGUGAA ....(((.((((......(((((((..........))))))))))))))((((((.....)))))).............((((..-....)))). ( -19.20, z-score = -1.84, R) >droYak2.chr2L 3178089 75 - 22324452 AACUUGGAUAAAACUUGGCGAGGGACUAGUUCUAUUCCCUCGUCUGCCAGCAUUUUCCAUAG--------UUACCCCAGUGAA------------ ((((((((.((..((.(((((((((.((....)).)))))))))....))..)).)))).))--------))...........------------ ( -21.70, z-score = -2.31, R) >droEre2.scaffold_4929 3225299 75 - 26641161 AACUUGGCUAAAACUUGGCGAGGGACUAGUUCUAUUCCCUCGUUUGCCAGCAUUUUCCAUAG--------UUACCCCAGUGAA------------ ...(((((........(((((((((.((....)).))))))))).)))))............--------((((....)))).------------ ( -19.30, z-score = -1.41, R) >consensus AACUUGGAUAAAACUUGGCGAGGGACUAGUUCCAUUCCCUCGUUUGCCAGCAGUUUCCAUAG________UUACCCCCCUCACCC_CC__GUGAA ....((((.....((.(((((((((..........)))))))))....)).....)))).................................... (-15.00 = -15.48 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:14 2011