| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,942,046 – 13,942,137 |
| Length | 91 |
| Max. P | 0.945437 |
| Location | 13,942,046 – 13,942,137 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 69.14 |
| Shannon entropy | 0.51901 |
| G+C content | 0.36839 |
| Mean single sequence MFE | -18.52 |
| Consensus MFE | -9.24 |
| Energy contribution | -10.00 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945437 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13942046 91 - 21146708 -----------ACUUUUAGCCAAGUCGAAGGACUUGUCG-CACUUACUUCUUUUCACCAAUAACAUUUAAUAAUAAGAUUGUUUCGCGUUACCUCCGAUACUU--- -----------.......((((((((....))))))..)-).......................................((.(((.(......)))).))..--- ( -13.00, z-score = -1.00, R) >droSim1.chr2R 12680378 92 - 19596830 ----------AUUUUUUAACCAAGUCGAAGGACUUGUAG-CAAUUACUUAUUUUCACCAAUAACAUUUAAUGAUAUGAUUGUUACGGGUUACCUCCGAUACCU--- ----------.............((((.(((((((((((-((((((.(((((................)))))..))))))))))))))..))).))))....--- ( -20.99, z-score = -3.24, R) >droSec1.super_1 11434722 102 - 14215200 ACUACUUGUUUACUUUUAGCCAAGUCGAAGGACUUGUCG-CAAUUACUUAUUUUCACCAAUAACAUUUAAUGAUAUGAUUGUUUCGGGCUAUCUCCGAUACCU--- ................((((((((((....)))))(..(-((((((.(((((................)))))..)))))))..).)))))............--- ( -17.69, z-score = -1.16, R) >droYak2.chr2R 5903140 88 + 21139217 -----------ACUUUUAGCCAAGUCGAAGGACUGGUCGAUUUUCACCAAUACAAUUCAAUAAGAUUGAAUAA---GAUUGUAUCGGAGUA-CACCGAUACCU--- -----------....(..((((.(((....)))))))..)..............(((((((...)))))))..---....(((((((....-..)))))))..--- ( -22.10, z-score = -2.89, R) >droEre2.scaffold_4845 8170108 87 - 22589142 -----------------GGCCAAGGCGAACGCCUUGUCG-AAAUUAUUUAUUUUCACCAGUAACACUCAAUAAUAAGAUACAAUCGGAAUA-CCCAGGUAUCGGGG -----------------(((.(((((....))))))))(-(((........)))).((((.....)).........(((((....((....-.))..))))))).. ( -18.80, z-score = -1.32, R) >consensus ___________ACUUUUAGCCAAGUCGAAGGACUUGUCG_CAAUUACUUAUUUUCACCAAUAACAUUUAAUAAUAAGAUUGUUUCGGGUUA_CUCCGAUACCU___ ....................((((((....))))))............................................((.((((.......)))).))..... ( -9.24 = -10.00 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:18 2011