| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,875,127 – 13,875,202 |
| Length | 75 |
| Max. P | 0.670715 |
| Location | 13,875,127 – 13,875,202 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | forward |
| Mean pairwise identity | 70.34 |
| Shannon entropy | 0.60269 |
| G+C content | 0.43018 |
| Mean single sequence MFE | -18.11 |
| Consensus MFE | -5.63 |
| Energy contribution | -8.01 |
| Covariance contribution | 2.38 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.31 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.670715 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13875127 75 + 21146708 CGAGGGCAAUGAAAUGAAAGUGCAUUUCCCAUUUAGACGCAAAAGAUGCAGCCCUCAAAGAGCUUUAAGUAGCAG .((((((...((((((......))))))..........(((.....))).)))))).....(((......))).. ( -22.90, z-score = -3.66, R) >droSim1.chr2R 12611035 75 + 19596830 CGAGGGCAAUGAAAUGAAAGUGCAUUUCCCAUUUAGACGCAGAAGUUGCAGCCCUCAAAGAGCUUUAAGUAGCAG .((((((...((((((......))))))..........((((...)))).)))))).....(((......))).. ( -22.60, z-score = -3.19, R) >droSec1.super_1 11369568 75 + 14215200 CGAGGGCAAUGAAAUGAAAGUGCAUUUUCCAUUUAGACGCAGAAGUUGCAGCCCUCAAAGAGCUUUAAGUAGCAA .((((((...((((((......))))))..........((((...)))).)))))).....(((......))).. ( -20.50, z-score = -2.19, R) >droYak2.chr2R 5834597 75 - 21139217 CAAGGGCAAUGAAAUGAAAGUGCAUUUCCCAUUUAGACGCAGAAGUUGCAGCCCUCAAAGAGCUUUAAGUAGCAG ..(((((...((((((......))))))..........((((...)))).)))))......(((......))).. ( -18.10, z-score = -1.56, R) >droEre2.scaffold_4845 8104047 74 + 22589142 CGAGGGCAAUGAAAUGAAAGUGCAUUUCCCAUUUAGACGCAGAAGUUGAAGCCCUCAAAGAGCUUUAAGUAGCA- .((((((...((((((......)))))).......(((......)))...)))))).....(((......))).- ( -21.50, z-score = -3.16, R) >droAna3.scaffold_13266 9573813 60 - 19884421 UGUGGGCUUUAAAAUGAAAGUUCACUUGCAGUUUGG---------------CAUUUAAGGAGCUUUAAGACUCAG .(((((((((......))))))))).((.(((((((---------------(.........)))...))))))). ( -12.90, z-score = -0.53, R) >droVir3.scaffold_12855 337335 62 - 10161210 ------CAUCAACGUCUACGUUUCUAUCCAAAUCGCAUGAAGG-------GCAAACACUUGGCUACAUGUUGCAA ------....((((....))))............(((((..((-------.(((....))).)).)))))..... ( -8.30, z-score = 0.47, R) >consensus CGAGGGCAAUGAAAUGAAAGUGCAUUUCCCAUUUAGACGCAGAAGUUGCAGCCCUCAAAGAGCUUUAAGUAGCAG .((((((...((((((......)))))).........(......).....)))))).....(((......))).. ( -5.63 = -8.01 + 2.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:10 2011