| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,865,816 – 13,865,907 |
| Length | 91 |
| Max. P | 0.861200 |
| Location | 13,865,816 – 13,865,907 |
|---|---|
| Length | 91 |
| Sequences | 9 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 91.72 |
| Shannon entropy | 0.17118 |
| G+C content | 0.43668 |
| Mean single sequence MFE | -19.34 |
| Consensus MFE | -17.99 |
| Energy contribution | -17.82 |
| Covariance contribution | -0.17 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.96 |
| SVM RNA-class probability | 0.861200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13865816 91 - 21146708 ---CAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGC ---....(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.56, R) >droSim1.chr2R 12601669 91 - 19596830 ---CAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGC ---....(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.56, R) >droSec1.super_1 11360334 91 - 14215200 ---CAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGC ---....(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.56, R) >droYak2.chr2R 5824907 91 + 21139217 ---CAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGC ---....(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.56, R) >droEre2.scaffold_4845 8094165 91 - 22589142 ---CAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGG ---....(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.61, R) >droAna3.scaffold_13266 9564307 94 + 19884421 ACUCAUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU-CUGC .......(((((......))----)........(((((((....((((((........)))))).....))))))).))(((....))).....-.... ( -18.80, z-score = -1.59, R) >dp4.chr3 6332053 92 - 19779522 ---CGUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUCUGAAUGUGCUGCGCCUAAUGGCCUUCUGCUGG ---....((((.(((...(.----....).)))(((((((....((((((........)))))).....))))))).))(((....))).....))... ( -19.10, z-score = -1.03, R) >droPer1.super_2 6547970 92 - 9036312 ---CGUCGCGCUGUCCUUGG----CUAACUGACGCACAUUAUUCUGAAAUUAACAAACAAUUUACUCUGAAUGUGCUGCGCCUAAUGGCCUUCUGCUGG ---....((((.(((...(.----....).)))(((((((......(((((.......)))))......))))))).))(((....))).....))... ( -18.90, z-score = -0.99, R) >droWil1.scaffold_180745 2385295 89 - 2843958 -----CAUCGUUGUCCUUGGGCAACUAACUGACGCACAUUAUACCGAAUUUAACAAACAAUUUACGUUGAAUGUGCCGGGCCUAAUGGUGUUUC----- -----....((((((....)))))).....(((((.(((((..(((.(((((((...........)))))))....)))...))))))))))..----- ( -23.30, z-score = -1.75, R) >consensus ___CAUCGCGCUGUCCUUGG____CUAACUGACGCACAUUAUUCUGAAUUUAACAAACAAUUUACUUUGAAUGUGCUGCGCCUAAUGGCCUUUU_CUGC .......(((..(((.((((....))))..)))(((((((....((((((........)))))).....))))))))))(((....))).......... (-17.99 = -17.82 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:09 2011