| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,845,888 – 13,845,994 |
| Length | 106 |
| Max. P | 0.747987 |
| Location | 13,845,888 – 13,845,994 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 74.21 |
| Shannon entropy | 0.42820 |
| G+C content | 0.44193 |
| Mean single sequence MFE | -23.26 |
| Consensus MFE | -16.30 |
| Energy contribution | -17.06 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747987 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13845888 106 - 21146708 GAUUAACAAAAGGCAACCACAUGUCGAUGGUAUUUUCUCUGAGUGCACUGGGUUCCACGCGCAUUGCAUCAAGUACUUUAGUACGGGAGGAAACCAAGAAGUUCAG ....(((....((((......))))..((((.((((((((((.((((.((.((.....)).)).))))))).((((....))))))))))).))))....)))... ( -27.50, z-score = -1.18, R) >droEre2.scaffold_4845 8074185 89 - 22589142 ----------------GUGUAAGUCAGUGGUAUUUUCCCUGAGUGCAUUUGG-UCCACGCGCAUUGCAUGAAGUACUUUAGUACGGGAGUACACCAAGAAGUUGAG ----------------(((((..((((.((......)))))).)))))((((-(.((.((.....)).))..(((((((......))))))))))))......... ( -22.10, z-score = -0.48, R) >droYak2.chr2R 5804395 96 + 21139217 ---------GAGCACGUCAAAAGUAAGUUAUUUUUUCCCUCAGUGCACUUGG-UCCACGCGCAUUGCAUGAAGUACUUUGGUACGGGAGUACACCAAGAAGUUGAG ---------..((((...(((((((...))))))).......)))).(((((-(.((.((.....)).))..(((((((......)))))))))))))........ ( -20.50, z-score = 0.42, R) >droSec1.super_1 11340490 80 - 14215200 ------------------UUUUAUAUGUAGUAUUUUCUCUCAGUGCACUGGG-UCCACACGCAUUGCAUCAAGUACUUUAGUACGGGAGGAAACCAAGA------- ------------------..............(((((((((.(((((.((.(-(....)).)).)))))...((((....)))))))))))))......------- ( -21.80, z-score = -2.39, R) >droSim1.chr2R 12581602 87 - 19596830 ------------------UUUUAUAUAUGGUAUUUUCUCUGAGUGCACUGGG-UCCACGCGCAUUGCAUCAAGUACUUUAGUACGGGAGGAAACCAAGAAGUUCAG ------------------.........((((.((((((((((.((((.((.(-(....)).)).))))))).((((....))))))))))).)))).......... ( -24.40, z-score = -2.27, R) >consensus __________________AUAUGUAAGUGGUAUUUUCUCUGAGUGCACUGGG_UCCACGCGCAUUGCAUCAAGUACUUUAGUACGGGAGGAAACCAAGAAGUUCAG ...........................((((.(((((((..(((((....(....)....))))).......((((....))))))))))).)))).......... (-16.30 = -17.06 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:01 2011