| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,845,569 – 13,845,641 |
| Length | 72 |
| Max. P | 0.933244 |
| Location | 13,845,569 – 13,845,641 |
|---|---|
| Length | 72 |
| Sequences | 3 |
| Columns | 81 |
| Reading direction | reverse |
| Mean pairwise identity | 54.70 |
| Shannon entropy | 0.60086 |
| G+C content | 0.33025 |
| Mean single sequence MFE | -11.87 |
| Consensus MFE | -7.45 |
| Energy contribution | -5.90 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.67 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.38 |
| SVM RNA-class probability | 0.933244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13845569 72 - 21146708 -AUGAAGAUUCAUAGGAAAAAUGGUCGUGCAGA-----CAAUGUACGAUGAAAUAAUCAGCUUUUUAG--AAAUGAAAAC- -.(((...(((....)))...(.((((((((..-----...)))))))).).....)))..((((((.--...)))))).- ( -13.90, z-score = -2.23, R) >droSec1.super_1 11340192 72 - 14215200 -AUGAAGACACAAAGGAAAAGUGGUCGUGCAGA-----CAGUGUACGAUGAAAUAAUCAGCUUUUUGG--AAAUGAAAAC- -..............(((((((.((((((((..-----...))))))))((.....)).)))))))..--..........- ( -13.10, z-score = -1.25, R) >droGri2.scaffold_15245 10276681 81 + 18325388 UUCAAAAGUUUAUGGGAAAAGGGCUUAAGUGGGAUUUCUAAAGCUUAAUCUUGCAAUCGACAAUCAAAUUUUAUACAAAUU .......(((.((..(...((((.((((((.((....))...)))))))))).).)).))).................... ( -8.60, z-score = 0.56, R) >consensus _AUGAAGAUUCAUAGGAAAAGUGGUCGUGCAGA_____CAAUGUACGAUGAAAUAAUCAGCUUUUUAG__AAAUGAAAAC_ .....................(.((((((((..........)))))))).).............................. ( -7.45 = -5.90 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:31:00 2011