| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,812,618 – 13,812,708 |
| Length | 90 |
| Max. P | 0.574385 |
| Location | 13,812,618 – 13,812,708 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 71.94 |
| Shannon entropy | 0.57701 |
| G+C content | 0.59911 |
| Mean single sequence MFE | -36.92 |
| Consensus MFE | -17.48 |
| Energy contribution | -17.29 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13812618 90 - 21146708 -----------------GGAAGUGGUGUCUUGGCAGGUGGUGAGUACUCAGCCGUGGCUUCGGAUAAUCUUCGAUACUCCCCGCUCCUCGAGUGUUGCAACUUCCAG -----------------((((((.(((.(((((..(((((.(((((...(((....)))(((((.....)))))))))).)))))..)))))...))).)))))).. ( -33.80, z-score = -2.21, R) >droGri2.scaffold_15245 6171494 104 + 18325388 ---CGGGUACGGGCACUGGCAGCGGCACCUUGGCCGGUGGCGAGUAUUGGGCAUUUGCCUCGGACAGGCGACGAUAUUCACCGCUGCGCGAAUGUUGCAGCUUCCAG ---((....))....((((.(((.((((.((.((((((((.(((((((((((....)))(((......))))))))))).)))))).)).)).).))).))).)))) ( -42.90, z-score = -1.00, R) >droMoj3.scaffold_6496 8450390 107 - 26866924 UGGCCACAUUGGCCACCGGCACUGGCACUUUGGCUGGCGGCGAGUAUUCGGCAUUCGCCUCCGACAGCCGUCGGUAUUCGCCGCUGCGCGAAUGCUGCAGCUUCCAG (((((.....)))))..(((..(((((.((((((.(((((((((((...(((....))).(((((....)))))))))))))))))).)))))))))..)))..... ( -49.50, z-score = -2.27, R) >droVir3.scaffold_12875 5259561 90 + 20611582 -----------------GGCACAGGUAUCUUUGCCGGCGGCGAGUACUCGGCAUUUGCCUCGGAUAGGCGUCGAUACUCGCCGCUUCGCGAAUUCUGCAGCUUCCAG -----------------(((.((((....(((((.(((((((((((.(((((....((((.....))))))))))))))))))))..))))).))))..)))..... ( -39.70, z-score = -3.12, R) >droWil1.scaffold_180745 2304248 103 - 2843958 ----GGGAGCUGUUGAUGGCGCUGGUACCUUAGCUGGCGGAGAAUAUUCUGCUUGAGCCUCUGUUAAACGACGAUAUUCACCACUGCGGGAGUGCUGCAACUUCCAA ----(((((.(((((..((((((((....))))).(((((((....)))))))...)))((........)))))))))).)).....((((((......)))))).. ( -28.30, z-score = 0.51, R) >droPer1.super_2 6486389 102 - 9036312 -----GGAAUCGGAAUCGGGUUCGGGGUCUUGGCUGGGGGCGAGUACUCUGCGGUUGCCUCCGACAACCGUCGGUACUCUCCGCUGCGCGAGUGCUGCAACUUCCAG -----......(((....(((((((.(.((((((.((.((.(((((((..(((((((.......))))))).))))))).)).)))).))))).))).))))))).. ( -39.70, z-score = -0.27, R) >dp4.chr3 6271725 102 - 19779522 -----GGAAUCGGAAUCGGGUUCGGGGUCUUGGCUGGGGGCGAGUACUCUGCGGUUGCCUCCGACAACCGUCGGUACUCUCCGCUGCGCGAGUGCUGCAACUUCCAG -----......(((....(((((((.(.((((((.((.((.(((((((..(((((((.......))))))).))))))).)).)))).))))).))).))))))).. ( -39.70, z-score = -0.27, R) >droAna3.scaffold_13266 9505167 90 + 19884421 -----------------GGAACCGGGGUCUUGGCUGGUGGGGAGUACUCGGCAGUGGCCUCCGAGAGUCGGCGGUACUCGCCACUCCUCGAGUGCUGUAGCUUCCAG -----------------(((((.(.((((((((..(((((.(((((((.(((....))).(((.....))).))))))).)))))..))))).))).).).)))).. ( -38.10, z-score = -0.25, R) >droEre2.scaffold_4845 8041296 90 - 22589142 -----------------GGAAGUGGUGUCUUGGCAGGUGGUGAGUACUCAGCGGUGGCUUCUGAUAAUCUUCGAUAUUCCCCGCUCCUCGAGUGCUGCAGCUUCCAG -----------------((((((..(((....)))....((.((((((((((((.((..((.((......))))....)))))))....))))))))).)))))).. ( -29.70, z-score = -0.49, R) >droYak2.chr2R 5769912 90 + 21139217 -----------------GGAAGCGGUGUCUUGGCAGGUGGUGAGUACUCGGCCGUGGCCUCGGAUAAUCUGCGAUAUUCCCCGCUCCUCGAGUGCUGCAGCUUCCAG -----------------((((((.(((((((((..(((((.(((((.(((((....))).(((.....))).))))))).)))))..))))).)).)).)))))).. ( -35.60, z-score = -1.19, R) >droSec1.super_1 11307588 90 - 14215200 -----------------GGAAGUGGUGUCUUGGCAGGUGGUGAGUACUCAGCGGUGGCUUCGGAUAAUCUUCGAUAUUCUCCGCUCCUCGAGUGCUGCAGCUUCCAG -----------------((((((..(((....)))....((.((((((((((((.((..(((((.....)))))...)).)))))....))))))))).)))))).. ( -31.90, z-score = -1.08, R) >droSim1.chr2R_random 2571701 90 - 2996586 -----------------GGAAGUGGUGUCUUGGCAGGUGGUGAGUACUCAGCCGUGGCUUCGGAUAAUCUUCGAUACUCCCCGCUCCUCGAGUGCUGCAGCUUCCAG -----------------((((((.(((((((((..(((((.(((((...(((....)))(((((.....)))))))))).)))))..))))).)).)).)))))).. ( -34.20, z-score = -1.56, R) >consensus _________________GGAAGUGGUGUCUUGGCAGGUGGCGAGUACUCGGCAGUGGCCUCGGAUAAUCGUCGAUACUCCCCGCUCCGCGAGUGCUGCAGCUUCCAG .................((.....(((.((((...(((((.(((((.(((((....)))...((......))))))))).)))))...))))...))).....)).. (-17.48 = -17.29 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:57 2011