| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,797,557 – 13,797,653 |
| Length | 96 |
| Max. P | 0.549734 |
| Location | 13,797,557 – 13,797,653 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 61.98 |
| Shannon entropy | 0.64115 |
| G+C content | 0.48206 |
| Mean single sequence MFE | -24.99 |
| Consensus MFE | -14.46 |
| Energy contribution | -14.38 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.32 |
| Mean z-score | -0.31 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.549734 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13797557 96 - 21146708 --------------UCGGAAGCACCGAACGGUGGCCAAUGUCAUCAUAACUGCACCUAAGGCUUUAAGCUGCUUUCUGCGGAAACUGCA-GAGCCAAACCGACACAUUUUU------ --------------((((((((.......((((((....))))))..............(((.....)))))))((((((....).)))-))......)))).........------ ( -25.80, z-score = -1.13, R) >droSim1.chr2R 12540257 99 - 19596830 --------------UCGGAAGCAACGAACGGUGGCCAAUGUCAUCAUAACUGCACCUAAGGCUUUAAGCUGCUUUUUGCGGAAACUGCA-UAGCCAAACCGACACACAUUUUUU--- --------------((((..(((......((((((....)))))).....)))......((((...((((((.....))))...))...-.))))...))))............--- ( -23.50, z-score = -0.85, R) >droYak2.chr2R 5754702 78 + 21139217 ---------------CGAAAGCGGCGAACGGUGGCCAAUGUCAUCAUAACUGCAGCUAAGGCUUUAAGCUGCUUUCUGUGGCGCACUUUUUUU------------------------ ---------------.(((((((((....((((((....))))))........(((....)))....))))))))).................------------------------ ( -23.20, z-score = -0.68, R) >droEre2.scaffold_4845 8025115 112 - 22589142 AAGCAGCGGAAGCAGCGGACGCAGCGAACGGUGGCCAAUGUCAUCAUAACUGCAACUAAGGCUUUAAGCGGCUUGCUGCGGAAAGUGCAGGGGCCAAACCGACACACUUUUU----- ..((.((....)).))...((((((((..((((((....))))))....((((..............)))).))))))))(((((((..((.......))....))))))).----- ( -36.94, z-score = -0.58, R) >droAna3.scaffold_13266 9490709 99 + 19884421 --------------CCCAGGCGGACGGACAGUGGCGAAUGUCAUCAUAAUUGCACUCAAAGCCUUAAACUGC----UGCAAGUUUCUUUCCCAGCUAUUUGACAUACUUUUUGUAUU --------------.((....))(((((.((((((....((((.......)).)).....)))(((((..((----((..((.....))..))))..)))))...))).)))))... ( -15.50, z-score = 1.69, R) >consensus ______________UCGGAAGCAACGAACGGUGGCCAAUGUCAUCAUAACUGCACCUAAGGCUUUAAGCUGCUUUCUGCGGAAACUGCA_GAGCCAAACCGACACACUUUUU_____ ....................(((......((((((....))))))....(((((...(((((........))))).)))))....)))............................. (-14.46 = -14.38 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:54 2011