| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,778,217 – 13,778,322 |
| Length | 105 |
| Max. P | 0.991598 |
| Location | 13,778,217 – 13,778,322 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 87.89 |
| Shannon entropy | 0.21966 |
| G+C content | 0.41079 |
| Mean single sequence MFE | -33.98 |
| Consensus MFE | -18.39 |
| Energy contribution | -19.98 |
| Covariance contribution | 1.59 |
| Combinations/Pair | 1.10 |
| Mean z-score | -3.89 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.49 |
| SVM RNA-class probability | 0.991598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13778217 105 - 21146708 -GAAACAUUUAUUAUUGACAAUGGCCAAAAGUUUGGCCAUUCGCUUUGCUUUUUGGC---CAACAUCGUUCAUUUGGCCAGAC----GGCGUAGCGACAAAAAUUGAUUUACA -.....(((.(((.(((...((((((((....))))))))(((((.((((.((((((---(((..........))))))))).----)))).)))))))).))).)))..... ( -36.40, z-score = -4.74, R) >droSim1.chr2R 12520021 105 - 19596830 -GCAACAUUUAUUAUUGACAAUGGCCAAAAGUUUGGCCAUUCGCUUUGCUUUUUGGC---CAACAUCGUUCUUUUGGCCAGAC----GGCGAAGCGACAAAAAUUGAUUUACA -.....(((.(((.(((...((((((((....))))))))((((((((((.((((((---(((..........))))))))).----))))))))))))).))).)))..... ( -40.30, z-score = -5.88, R) >droSec1.super_1 11273719 105 - 14215200 -GCAACAUUUAUUAUUGACAAUGGCCAAAAGUUUGGCCAUUCGCUUUGCUUUUUGGC---CAACAUCGUUCUUUUGGCCAGAC----GGCGAAGCGACAAAAAUUGAUUUACA -.....(((.(((.(((...((((((((....))))))))((((((((((.((((((---(((..........))))))))).----))))))))))))).))).)))..... ( -40.30, z-score = -5.88, R) >droYak2.chr2R 5734407 113 + 21139217 GGCAACAUUUAUUAUUGACAAUGGCCAAAAGUUUUGCCAUUCGCUUUGCUUUCUGGCCAACAACAUCGCUCUUUUGGCCAGACGGCGGGCGAAGCGACAAAAAUUGAUUUACA (((((.((((....(((........))))))).)))))..((((((((((((((((((((.............)))))))))....)))))))))))................ ( -35.42, z-score = -2.98, R) >droEre2.scaffold_4845 8005646 108 - 22589142 -GAAACAUUUAUUAUUGACAAUGGCCAAAAGUUUUGCCAUUCGCUUUGCUUUUUGGCCAACAACAUCGUUCCUCUGGCCAGAC----GGCGAAGCGACAAAAAUUGAUUUACA -.....(((.(((.(((...(((((.((....)).)))))((((((((((.((((((((...............)))))))).----))))))))))))).))).)))..... ( -32.76, z-score = -3.78, R) >droAna3.scaffold_13266 9472201 96 + 19884421 -GCAACAUUUAUUAUUGACAAUGGCCAAAAGUUUUGGUUUUUG---------UUGGC---CAACAAACCUUCUCUGACCAGAC----GGCGGAGCGACAAAAAUUGAUUUACA -((...........(..((((..(((((.....)))))..)))---------)..).---............((((.((....----)))))))).................. ( -18.70, z-score = -0.07, R) >consensus _GCAACAUUUAUUAUUGACAAUGGCCAAAAGUUUGGCCAUUCGCUUUGCUUUUUGGC___CAACAUCGUUCUUUUGGCCAGAC____GGCGAAGCGACAAAAAUUGAUUUACA ......(((.(((.(((...(((((..........)))))((((((((((.((((((...................)))))).....))))))))))))).))).)))..... (-18.39 = -19.98 + 1.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:50 2011