| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,768,571 – 13,768,670 |
| Length | 99 |
| Max. P | 0.539865 |
| Location | 13,768,571 – 13,768,670 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 65.51 |
| Shannon entropy | 0.57171 |
| G+C content | 0.42868 |
| Mean single sequence MFE | -24.86 |
| Consensus MFE | -11.58 |
| Energy contribution | -11.90 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.539865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13768571 99 + 21146708 GCAAUUUCGUUUUUGGACUUAUCUGGAAGUUGAGAUGCAUUCGCAUCUUUAGGUUUAGGCACGGUGUACACUUGGCCUCUAACCUUUGGGUUACUAACG------------ .......((((....((((((..........(((((((....))))))).(((((.((((..(((....)))..))))..))))).))))))...))))------------ ( -26.40, z-score = -1.79, R) >droSim1.chr2R 12510440 99 + 19596830 CUAAUUUCGUUUUUGGACUGAUCUGGAAGUUGAGAUGCAUUCGCAUCUUUAGGCUUAGGCACGGUGUAAACUUGGCCUCUAGCCUUUGUGUUACUAACG------------ ..........(((..((....))..)))((((((((((....))))))).(((((.((((..(((....)))..))))..)))))..........))).------------ ( -26.80, z-score = -1.54, R) >droSec1.super_1 11264120 99 + 14215200 CCAAUUUCGUUUUUGGGCUCAUCUGGAAGUUGAGAUGCAUUCGCAUCUUUAGGCUUAGGCACGGUGUAAACUUGGCCUCUAGUUUUUGGGUUACUAACG------------ .......((((....((((((.((((((((((((((((....)))))))..)))))((((..(((....)))..))))))))....))))))...))))------------ ( -29.00, z-score = -2.16, R) >droYak2.chr2R 5725134 93 - 21139217 UCAGUUUCCUGUUUGGUGUUAUCUUGUGU---UGUUGUAGUGUCAUUCUCAUCAUUAGUCACGGUAUUCCUUUGGGAUCGAUUCUUGGUCCUAGAA--------------- .(((....)))....(((....((.(((.---((.((......))....)).))).)).)))((....))(((((((((((...))))))))))).--------------- ( -16.20, z-score = -0.07, R) >droEre2.scaffold_4845 7996199 111 + 22589142 CCAAUUUCCUUUUUGGAGUUAUCUUGAAGGUGUGAUGUAGUGGCAUUCUCAUCUCCGGACACGGCAUACUUUUGGGAGCGUAACUUUGUCCUUAACCUUGAGUUCAUAGCA ((((........)))).(((((((..((((((((((((....))))........(((....)))))))))))..))).........((..((((....))))..)))))). ( -25.90, z-score = 0.11, R) >consensus CCAAUUUCGUUUUUGGACUUAUCUGGAAGUUGAGAUGCAUUCGCAUCUUUAGGCUUAGGCACGGUGUACACUUGGCCUCUAACCUUUGUGUUACUAACG____________ ...((.((((.((((((((((..........(((((((....))))))))))))))))).)))).)).....((((((.........)))))).................. (-11.58 = -11.90 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:47 2011