| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,761,259 – 13,761,310 |
| Length | 51 |
| Max. P | 0.853942 |
| Location | 13,761,259 – 13,761,310 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 95.75 |
| Shannon entropy | 0.06733 |
| G+C content | 0.52451 |
| Mean single sequence MFE | -9.88 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.65 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812100 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13761259 51 + 21146708 CUCUCUUUUGUGCUCUCUUUCUGGCCAAAAGACACGCACACACAUUCGCAC ...(((((((.(((........))))))))))...((..........)).. ( -9.20, z-score = -2.19, R) >droSim1.chr2R 12503171 51 + 19596830 CUCUCUUUUGUGCUCUCUUCCUGGCCGAAAGACACGCACGCACAUUCGCAC ...(((((((.(((........)))))))))).......((......)).. ( -10.00, z-score = -1.24, R) >droSec1.super_1 11256960 51 + 14215200 CUCUCUUUUGUGCUCUCUUCCUGGCCGAAAGACACGCACGCACAUUCGCAC ...(((((((.(((........)))))))))).......((......)).. ( -10.00, z-score = -1.24, R) >droEre2.scaffold_4845 7988763 51 + 22589142 CUCUCUUUUGUGCUCUCUUCCUGGCCAAAAGACACACACGCACAUUCGCAC ...(((((((.(((........)))))))))).......((......)).. ( -10.30, z-score = -2.69, R) >consensus CUCUCUUUUGUGCUCUCUUCCUGGCCAAAAGACACGCACGCACAUUCGCAC ...(((((((.(((........))))))))))................... ( -8.90 = -8.65 + -0.25)
| Location | 13,761,259 – 13,761,310 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 95.75 |
| Shannon entropy | 0.06733 |
| G+C content | 0.52451 |
| Mean single sequence MFE | -13.50 |
| Consensus MFE | -13.61 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.16 |
| Structure conservation index | 1.01 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.93 |
| SVM RNA-class probability | 0.853942 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13761259 51 - 21146708 GUGCGAAUGUGUGUGCGUGUCUUUUGGCCAGAAAGAGAGCACAAAAGAGAG ...........(((((.(.((((((.....)))))).))))))........ ( -11.80, z-score = -1.07, R) >droSim1.chr2R 12503171 51 - 19596830 GUGCGAAUGUGCGUGCGUGUCUUUCGGCCAGGAAGAGAGCACAAAAGAGAG (..(....)..)((((.(.((((((.....)))))).)))))......... ( -15.30, z-score = -1.42, R) >droSec1.super_1 11256960 51 - 14215200 GUGCGAAUGUGCGUGCGUGUCUUUCGGCCAGGAAGAGAGCACAAAAGAGAG (..(....)..)((((.(.((((((.....)))))).)))))......... ( -15.30, z-score = -1.42, R) >droEre2.scaffold_4845 7988763 51 - 22589142 GUGCGAAUGUGCGUGUGUGUCUUUUGGCCAGGAAGAGAGCACAAAAGAGAG (..(....)..).(((((.((((((.....))))))..)))))........ ( -11.60, z-score = -0.73, R) >consensus GUGCGAAUGUGCGUGCGUGUCUUUCGGCCAGGAAGAGAGCACAAAAGAGAG (..(....)..)((((.(.((((((.....)))))).)))))......... (-13.61 = -12.80 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:44 2011