| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,743,453 – 13,743,564 |
| Length | 111 |
| Max. P | 0.741965 |
| Location | 13,743,453 – 13,743,564 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 74.20 |
| Shannon entropy | 0.44749 |
| G+C content | 0.42063 |
| Mean single sequence MFE | -29.52 |
| Consensus MFE | -13.90 |
| Energy contribution | -14.82 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13743453 111 - 21146708 UUUUAUGCUAACUUCUGUCAGUGAAUCACAUCGACAUAUGUAUUU----GCAUUGAUAUCUUGCGGA-UUUCCGAAUGCCAGUAACGACGAUUCACUGUACUUGGUUGGCGGAGCG .....((((((((...(((((((((((...(((......((((((----(((.........)))((.-...))))))))......))).))))))))).))..))))))))..... ( -33.30, z-score = -2.59, R) >droEre2.scaffold_4845 7970759 101 - 22589142 AUGUAUGCU-UUUUUGUUAAGUGAAUCACAUCAACAUUUUUGCAUA---GU-----UAUCCCGCGUG-UUGCUGAAUUCCAGUAACGACGAUUCACUGUA-----CGGAUGGAGAG .......((-(((((((..((((((((..............((...---..-----......))(((-((((((.....))))))).))))))))))..)-----)))).)))).. ( -24.50, z-score = -1.19, R) >droYak2.chr2R 5699793 115 + 21139217 UUUUAUGCUGGUUUCAUUUAGUGAAUCACAUCAACAUUUUUGCAUAUAUGUACAUAUAUCUCGCGAC-UUGCUGAAUUCCAGCAACGACGAUUCACUGUACCCGUCGAAUGGCGAG .........(((......(((((((((............((((((((((....))))))...)))).-((((((.....))))))....))))))))).)))((((....)))).. ( -27.20, z-score = -1.64, R) >droSec1.super_1 11239202 107 - 14215200 UUUUAUGCUGACUUCUUUCAGUGAAUCACAUCGACA----UAUUU----GCAUAGAUAUCUCGCGAAGCUUCCGAAUGCCAGUAACGACGAUUCACUGUACUUGGUUGGC-GAGCG .....(((..(((.....(((((((((...(((...----((((.----((((.......(((.((....))))))))).)))).))).))))))))).....)))..))-).... ( -29.31, z-score = -1.81, R) >droSim1.chr2R 12484112 108 - 19596830 AUUUAUGCUGACUUCUUUCAGUGAAUCACAGCGACA----UAUUU----GCAUAGAUAUCUCGCGAAGCUUUCGAAUGCCAGUAACGACGAUUCACUGUACUUGGUUGGCGGAGCG .....(((..(((.....(((((((((...((((.(----((((.----.....))))).))))...((........))..........))))))))).....)))..)))..... ( -33.30, z-score = -2.43, R) >consensus UUUUAUGCUGACUUCUUUCAGUGAAUCACAUCGACAU_U_UAUUU____GCAUAGAUAUCUCGCGAA_UUUCCGAAUGCCAGUAACGACGAUUCACUGUACUUGGUUGGCGGAGCG ......(((((((.....(((((((((......................((...........)).................((....))))))))))).....)))))))...... (-13.90 = -14.82 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:42 2011