| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,738,302 – 13,738,368 |
| Length | 66 |
| Max. P | 0.573151 |
| Location | 13,738,302 – 13,738,368 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 68.41 |
| Shannon entropy | 0.57252 |
| G+C content | 0.48724 |
| Mean single sequence MFE | -21.23 |
| Consensus MFE | -6.30 |
| Energy contribution | -7.14 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.573151 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13738302 66 + 21146708 --------AAUAUCGGUAACAGCUGAU--GGCAGGGCUGGCAGCACUAGUGCAAUCGAUAGAUCGAUAUGUUGGCG---- --------..(((((((....))))))--).....((..((((((....))).(((((....))))).)))..)).---- ( -22.00, z-score = -2.20, R) >droAna3.scaffold_13266 9436116 71 - 19884421 ------UAAACAUU--UGACAGCUGAUUGGGCAGGGUUGUCGCCUCCGCAACAAUCGAUAUUUCGAU-UGGCAGUGGGCA ------........--.(((((((..........)))))))(((..(....(((((((....)))))-))...)..))). ( -24.00, z-score = -2.21, R) >droEre2.scaffold_4845 7965387 74 + 22589142 AAUAUAUACAUAUCGGUAUUAGCUGAU--GGCUGGACUGUCAGCACUAGCGCAAUCGAUAGAUCGAUAUGUUGGCG---- .......((((((((((....((((((--((.....)))))))).(((.((....)).))))))))))))).....---- ( -23.10, z-score = -2.10, R) >droYak2.chr2R 5694547 68 - 21139217 ------AAUAUAUCGGUAACAGCUGAU--GGCAGGGCUGUCAGCACCAGCGCAAUCGAUAUAUCGAUAUGUUGGCG---- ------((((((((((((...((((((--(((...))))))))).....((....))...))))))))))))....---- ( -23.40, z-score = -2.46, R) >droSec1.super_1 11234071 66 + 14215200 --------AAUAUCGGUAACAGCUGAU--GGCAGGGCUGGCAGCACUAGUGCAAUCGAUAGAUCGAUAUGUUGGCG---- --------..(((((((....))))))--).....((..((((((....))).(((((....))))).)))..)).---- ( -22.00, z-score = -2.20, R) >droSim1.chr2R 12478969 66 + 19596830 --------AAUAUCGGUAACAGCUGAU--GGCAGGGCUGGCAGCACUAGUGCAAUCGAUAGAUCGAUAUGUUGGCG---- --------..(((((((....))))))--).....((..((((((....))).(((((....))))).)))..)).---- ( -22.00, z-score = -2.20, R) >droMoj3.scaffold_6496 15883924 64 - 26866924 --------CAUUCCGUUAACAGCUCAU---GCGAGCUAACAGCACAAACGAUUAUCGAUA-ACAGCGGCCACAGCG---- --------....(((((...(((((..---..)))))...........((.....))...-..)))))........---- ( -12.10, z-score = -0.96, R) >consensus ________AAUAUCGGUAACAGCUGAU__GGCAGGGCUGGCAGCACUAGUGCAAUCGAUAGAUCGAUAUGUUGGCG____ .....................((((((......(.((((.......)))).).(((((....)))))..))))))..... ( -6.30 = -7.14 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:41 2011