| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,725,506 – 13,725,613 |
| Length | 107 |
| Max. P | 0.930529 |
| Location | 13,725,506 – 13,725,613 |
|---|---|
| Length | 107 |
| Sequences | 3 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 90.00 |
| Shannon entropy | 0.13496 |
| G+C content | 0.60116 |
| Mean single sequence MFE | -16.60 |
| Consensus MFE | -16.60 |
| Energy contribution | -16.60 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.930529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13725506 107 + 21146708 GCUGCAACAUAUCACUUCCUGUGCCGCCGAUGUACCACCUCAACCUCCUUCUUUCCCCCCCUCCACCUUUUGUGCCACCCCCUUGGUCAGCUGCCUUCCUGCAGCAG ((((((((((..(((.....)))......))))....................................(((.((((......))))))).........)))))).. ( -16.60, z-score = -1.67, R) >droSec1.super_1 11221695 95 + 14215200 GCUGCAACAUAUCACUUCCUGUGCCGCCGAUGUACCACCUC-----------UCCCUCCCCCC-ACCUUUUGUGCCACCCCCUUGGUCAGCUGCCUUCCUGCAGCAG ((((((((((..(((.....)))......))))........-----------...........-.....(((.((((......))))))).........)))))).. ( -16.60, z-score = -1.23, R) >droSim1.chr2R 12465611 96 + 19596830 GCUGCAACAUAUCACUUCCUGUGCCGCCGAUGUACCACCUC-----------UACCUCCCCCCCACCUUUUGUGCCACCCCCUUGGUCAGCUGCCUUCCUGCAGCAG ((((((((((..(((.....)))......))))........-----------.................(((.((((......))))))).........)))))).. ( -16.60, z-score = -1.26, R) >consensus GCUGCAACAUAUCACUUCCUGUGCCGCCGAUGUACCACCUC___________UACCUCCCCCCCACCUUUUGUGCCACCCCCUUGGUCAGCUGCCUUCCUGCAGCAG ((((((((((..(((.....)))......))))....................................(((.((((......))))))).........)))))).. (-16.60 = -16.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:41 2011