Locus 452

Sequence ID dm3.chr2L
Location 3,142,740 – 3,142,808
Length 68
Max. P 0.518513
window614

overview

Window 4

Location 3,142,740 – 3,142,808
Length 68
Sequences 5
Columns 68
Reading direction forward
Mean pairwise identity 65.05
Shannon entropy 0.61229
G+C content 0.39066
Mean single sequence MFE -11.84
Consensus MFE -7.24
Energy contribution -6.96
Covariance contribution -0.28
Combinations/Pair 1.55
Mean z-score -0.30
Structure conservation index 0.61
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.05
SVM RNA-class probability 0.518513
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 3142740 68 + 23011544
AGGAUAUAAUAGUACAUAUAUUUCGGAUGUACCCUGUAGACAUUACGAUAGGGCAUUCUGAUUGAAUU
..((((((........))))))(((((....((((((.(......).))))))...)))))....... ( -12.40, z-score =  -0.53, R)
>dp4.chr4_group1 760874 51 - 5278887
----------------AGGAUCCCCCAC-UAUCCAGCAGCCACAAGAAGUGGAAGUAUUUGUUAAGGU
----------------.((((.......-.)))).((..((((.....))))..))............ (  -9.20, z-score =  -0.30, R)
>droYak2.chr2L 3135534 64 + 22324452
AGGAUAUA----UAUAUAUUUUUGGGACGUACCCUGUAGACAUUUAGAUAGGGCGUUCUCAGUGGGAU
.((((((.----...))))))((((((((..((((((..........))))))))))).)))...... ( -12.40, z-score =  -0.03, R)
>droSec1.super_5 1294413 65 + 5866729
AGGAUAUA---GUACAUAUAUUUUGGAUGUACCCUGUAGACAUUACGAUAGGGCGUUUUGAUUGGAUU
((((((((---.....))))))))(((((..((((((.(......).))))))))))).......... ( -10.20, z-score =  -0.03, R)
>droSim1.chr2L 3083852 65 + 22036055
AGGAUAUA---GUACAUAUAUUCUGGAUGUACCCUGUAGACAUUACGAUGGGGCGUUCUGAUUGGAUU
((((((((---.....))))))))((((((.((((((((...)))))..))))))))).......... ( -15.00, z-score =  -0.60, R)
>consensus
AGGAUAUA___GUACAUAUAUUUCGGAUGUACCCUGUAGACAUUACGAUAGGGCGUUCUGAUUGGAUU
........................(((((..((((((..........))))))))))).......... ( -7.24 =  -6.96 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:13:11 2011