| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,691,621 – 13,691,720 |
| Length | 99 |
| Max. P | 0.939541 |
| Location | 13,691,621 – 13,691,720 |
|---|---|
| Length | 99 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 94.12 |
| Shannon entropy | 0.09867 |
| G+C content | 0.48609 |
| Mean single sequence MFE | -25.82 |
| Consensus MFE | -23.66 |
| Energy contribution | -23.86 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.43 |
| SVM RNA-class probability | 0.939541 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13691621 99 - 21146708 GACUUACCUGCCGCUGCCGCU--------GCGCAGCGGCCACUUCGAAAUACGAAAUACAAAAUAAAACCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCACCAA ......(((((((((((....--------..))))))))...((((.....)))).......................)))..((.(((..(....)....))))). ( -25.20, z-score = -2.68, R) >droEre2.scaffold_4845 7918842 104 - 22589142 GACUUACCUGCCGCUGCCGCU---GCGCAGCGCAGCGGCCACUUCGAAAUACGAAAUACAAAAUAAAACCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCAGCAA ......(((((((((((.(((---....)))))))))))...((((.....)))).......................)))..(((.....(....)......))). ( -28.40, z-score = -1.90, R) >droYak2.chr2R 5647018 107 + 21139217 GACUUACCUGCCGCUGCUGCUGCUGCGCUGCGCAGCGGCCACUUCGAAAUACGAAAUACAAAAUAAAAUCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCAGCAA ......(((((((((((.((.((...)).))))))))))...((((.....)))).......................)))..(((.....(....)......))). ( -28.00, z-score = -0.88, R) >droSec1.super_1 11188103 99 - 14215200 GACUUACCUGCCGCUGCCGCU--------GCGCAGCGGACACUUCGAAAUACGAAAUACAAAAUAAAACCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCACCAA ......(((.(((((((....--------..)))))))....((((.....)))).......................)))..((.(((..(....)....))))). ( -22.30, z-score = -2.06, R) >droSim1.chr2R 12431239 99 - 19596830 GACUUACCUGCCGCUGCCGCU--------GCGCAGCGGCCACUUCGAAAUACGAAAUACAAAAUAAAACCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCACCAA ......(((((((((((....--------..))))))))...((((.....)))).......................)))..((.(((..(....)....))))). ( -25.20, z-score = -2.68, R) >consensus GACUUACCUGCCGCUGCCGCU________GCGCAGCGGCCACUUCGAAAUACGAAAUACAAAAUAAAACCAAACAAAGAGGAAUGUGUGCGCGAAAGAUACCACCAA ......(((((((((((.((.........))))))))))...((((.....)))).......................)))..((.(((..(....).))))).... (-23.66 = -23.86 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:38 2011