| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,668,920 – 13,669,023 |
| Length | 103 |
| Max. P | 0.637171 |
| Location | 13,668,920 – 13,669,023 |
|---|---|
| Length | 103 |
| Sequences | 13 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 69.39 |
| Shannon entropy | 0.67765 |
| G+C content | 0.47350 |
| Mean single sequence MFE | -26.19 |
| Consensus MFE | -11.46 |
| Energy contribution | -11.28 |
| Covariance contribution | -0.18 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.88 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.637171 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13668920 103 + 21146708 CUGGUCGAAGGGUAGAACUUCCAUGCGCCAAGCAUUGUCUACAAUGUCCAGCAGUAGAUCAUCGAUCGGUGCCUGCGACAGGCA-AUAAAACACAGGUUAUUAU-------- ((((((((.(((.......))).(((((...((((((....))))))...)).))).....))))))))((((((...))))))-...................-------- ( -28.30, z-score = -1.14, R) >droSim1.chr2R 12408638 103 + 19596830 UUGGUCGAACGGUAGAACUUCCAUACGCCAAGCAUUGUCUACAAUGUCCAGCAGUAGAUCAUCGAUCGGUGCCUGCGACAGGCA-AUAAAGCACAGGUUAUUAU-------- ((((((((..((........)).(((((...((((((....))))))...)).))).....))))))))((((((...))))))-...................-------- ( -25.50, z-score = -0.72, R) >droSec1.super_1 11167564 103 + 14215200 CUGGUCGAAUGGUAGAACUUCCAUACGCCAAGCAUUGUCUACAAUGUCCAGCAGUAGAUCAUCGAUCGGUGCCUGCGACAGGCA-AUAAAACACAGGUUACUAU-------- ((((((((((((........))))..((...((((((....))))))...)).........))))))))((((((...))))))-...................-------- ( -28.60, z-score = -1.67, R) >droYak2.chr2R 5625832 103 - 21139217 CUGGUCGAAGGGUAGAACUUCCAUGCGCCAUGCAUUGUCUACAAUGUCCAGCAGCAGAUCAUCAAUCGGUGCCUGCGACAGUUA-AUAGAACACGGAGUAUUAU-------- ((((((((((.......))))..(((.....((((((....))))))...)))((((..((((....)))).))))))).(((.-....))).)))........-------- ( -24.50, z-score = 0.32, R) >droEre2.scaffold_4845 7897924 103 + 22589142 CUGAUCGAAGGGUAGUACUUCCAUGCGCCAAGCAUUGUCUACAAUGUCCAGCAGCAGAUCAUCGAUCGGUGCCUGUGACAGUUA-AUUAUACACAGGGUAUUAU-------- ((((((((.(((.......))).(((((...((((((....))))))...)).))).....))))))))..((((((.......-......)))))).......-------- ( -30.72, z-score = -1.89, R) >droAna3.scaffold_13266 9367396 108 - 19884421 CUGAUCGAAGGGCAGAACUUCCAUGCGCCAAGCAUUGUCUACAAUGUCCAGGAGCAGAUCAUCGAUGGGUGCCUGUAAAUGUAA-GUGGAUGCGCAGCCGCAGCCUCAG--- .(((((((((.......))))..(((.((..((((((....))))))...)).))))))))..((.((.(((((((..((.(..-..).))..))))..))).))))..--- ( -31.10, z-score = 0.55, R) >dp4.chr3 16482110 99 + 19779522 CUGAUCGAAAGGCAGAACUUCCAUACGCCAGGCAUUGUCUACAAUGUCCAACAGCAGAUCAUCGAUCGGUGCCUGCAAAUGCCC-AUAAA-GUGUCUUUAC----------- (((.((....))))).........((((..(((((((....))))))).....((((..((((....)))).))))........-.....-))))......----------- ( -23.60, z-score = -0.90, R) >droPer1.super_4 6882579 99 - 7162766 CUGAUCGAAAGGCAGAACUUCCAUACGCCAGGCAUUGUCUACAAUGUCCAACAGCAGAUCAUCGAUCGGUGCCUGCAAAUGCCC-AUAAA-GUGUCUUUAC----------- (((.((....))))).........((((..(((((((....))))))).....((((..((((....)))).))))........-.....-))))......----------- ( -23.60, z-score = -0.90, R) >droWil1.scaffold_181141 733093 97 - 5303230 CUGAUCGAAAGGCAACACUUCAGUGCGCCAAGCAUUGUCUACAAUGUCCAAGAGUAGAUCGUCGAUGGGUGCCUGGAAAAUUUG-UCAGAGUUAGGAG-------------- ((((.((((.(....)..(((((.(((((...(((.((((((..(.....)..)))))).)).)...))))))))))...))))-)))).........-------------- ( -27.00, z-score = -1.13, R) >droVir3.scaffold_12875 16936366 109 + 20611582 UUGAUCGAACGGCAGCACUUCCAUGCGCCAAGCAUUGUCCACAAUGUCCAAUAAUAGAUCAUCAAUUGGUGCCUGUGAAAGUAC-AGCAAACGCCCCUCUAAGAAUCCGC-- .(((((....(((.(((......))))))..((((((....)))))).........)))))......((((.(((((....)))-))....))))...............-- ( -24.80, z-score = -1.09, R) >droMoj3.scaffold_6496 15800059 111 - 26866924 CUGAUCGUAUGGCAGUGCUUCCAUGCGCCAAGCAUUGUCCACAAUGUCCAAUAAUAGAUCAUCAAUCGGUGCCUGUGAAAAUUU-AGCAACGCCCACUCUUAGACUCGACGA ((((..((..(((..((((((((.(((((..((((((....)))))).........(((.....)))))))).)).))......-))))..))).))..))))......... ( -26.50, z-score = -0.78, R) >droGri2.scaffold_15245 16475504 111 + 18325388 CUGAUCGAAGGGCAAUACUUCCAUUCGCCAAGCAUUGUCCACAAUGUCCAAUAAUAGAUCAUCAAUAGGUGCCUGCAAAAAUUC-AGCAACGCCUCUUCUAAGAAACCAACA .(((((....((((((......))).)))..((((((....)))))).........))))).....(((((..(((........-.))).)))))................. ( -21.20, z-score = -1.24, R) >anoGam1.chr2L 36952818 107 - 48795086 GUGGUCGUAAGGCAGCUCGUCGGCAAUCCACUCGUUGUCCACCAAAUCGACCAAGCGUCCGCCCAAUGGUGGCUAGAGAUAUCACAACGAAAAACGAAAAAAAUAAU----- ((((((....))).(((....)))....)))(((((((((((((....(((.....))).......))))))...((....))))))))).................----- ( -25.00, z-score = -0.81, R) >consensus CUGAUCGAAGGGCAGAACUUCCAUGCGCCAAGCAUUGUCUACAAUGUCCAACAGUAGAUCAUCGAUCGGUGCCUGCGAAAGUCA_AUAAAACACAGGUUAUAAU________ .(((((....(((.............)))..((((((....)))))).........)))))................................................... (-11.46 = -11.28 + -0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:33 2011