| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,627,332 – 13,627,453 |
| Length | 121 |
| Max. P | 0.901159 |
| Location | 13,627,332 – 13,627,453 |
|---|---|
| Length | 121 |
| Sequences | 6 |
| Columns | 132 |
| Reading direction | forward |
| Mean pairwise identity | 63.07 |
| Shannon entropy | 0.66391 |
| G+C content | 0.39028 |
| Mean single sequence MFE | -31.33 |
| Consensus MFE | -9.01 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.16 |
| SVM RNA-class probability | 0.901159 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13627332 121 + 21146708 AGGUCUGUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACUUUAUAUAUUUUUUAACACUGCAAGUAGCUUUAGCAAUGCUUGCGGAUGCUGGUCACACUCGGCUGCAGACGUUUUUG----------- ..((((((((....(((((((((((.....)))))))........................(((((((((((....))..)))))))))......)))).......)))))))).......----------- ( -35.90, z-score = -3.04, R) >droWil1.scaffold_180699 2076669 111 + 2593675 ------------------AGGCUAGACUUCAAGCCAAAAAUAGCCAAGUUUUUAGCCAAU--UGAGAAGAACUGC-GCAUAUCUGUUGUAGUUUGCCUGUGACUGGCUCUAAUUGUUGUUGUCUCACUUUUG ------------------.((((((((((...((........)).)))))..)))))...--(((((.(((((((-(((....)).))))))))(((.......)))..............)))))...... ( -26.60, z-score = -0.44, R) >droSim1.chr2R 12367057 96 + 19596830 -------------------------AAGUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGUAGCUUUAGCAUUGCUUGCGGAUGCUGGUCACACUUGACUGCAGACGUUUUUG----------- -------------------------..((((((((......))))................(((((((((((....))..)))))))))..((.(((((....))))))))))).......----------- ( -26.00, z-score = -2.09, R) >droSec1.super_1 11125965 121 + 14215200 AAGUCUGUAGACAAUGAUUUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGCAAGCAGCUUUUGCAAUGCUUGCGGAUGCUGGUCACACUUGACUGCAGACGUUUUUG----------- ..((((((((.(((((...((((((.....))))))...................(((.(((((((((((((....))..))))))))).)).)))...)).))).)))))))).......----------- ( -37.20, z-score = -4.49, R) >droYak2.chr2R 5584860 120 - 21139217 UAGUCAACAGUCAAUGAUGUACCUAUUUUCUAGGUACGCCAAUUGUAUUUCUUUUCUAACACUGAAUUUAGCUUUGGCAUUGGUUGUG-AUGCUGGUCACACUUGGCUGCAGACGUUUUUG----------- ..(((.(((..((((...(((((((.....)))))))(((((..((..(((............)))....)).)))))))))..))).-.(((.(((((....))))))))))).......----------- ( -33.10, z-score = -2.23, R) >droEre2.scaffold_4845 7856364 121 + 22589142 UAGUCAGUAGACAAUUAUGUACCUAUUUUCUAGGUACACAAAUUGUAUUUCUUAUCUAACACUAAAUGUAGCUUUGGCAUUGCUUGCGGAUGCUGGUCACACUUGGCUGCAGUCGUUUUUG----------- (((..((...((((((.((((((((.....))))))))..))))))....))...)))........(((((((.((((...((........))..)))).....)))))))..........----------- ( -29.20, z-score = -1.08, R) >consensus _AGUC_GUAGACAAUGAUGUACCUAUUUUCUAGGUACUAUAACCUUAUAUAUUUUCUAACACUGAAAGUAGCUUUAGCAUUGCUUGCGGAUGCUGGUCACACUUGGCUGCAGACGUUUUUG___________ ................................(((......))).............(((.(((((((((((....))..))))))))).(((.((((......)))))))...)))............... ( -9.01 = -9.40 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:30 2011