| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,624,642 – 13,624,744 |
| Length | 102 |
| Max. P | 0.936988 |
| Location | 13,624,642 – 13,624,744 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 71.19 |
| Shannon entropy | 0.55692 |
| G+C content | 0.45865 |
| Mean single sequence MFE | -27.49 |
| Consensus MFE | -15.96 |
| Energy contribution | -18.26 |
| Covariance contribution | 2.29 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.936988 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13624642 102 - 21146708 UUGGG--AAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUAGUGAUAAAUUAAUUAGCCACUGCUACCACAUAACCCAGGGUGCGGAAACCUGAACCCAGCUCUGC----- .....--.............(((((...(((((.(((((((.........))))))).))))).............((((.(((....))).)))).)))))..----- ( -33.10, z-score = -2.23, R) >droSim1.chr2R 12363307 104 - 19596830 UUGGGGAAAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUAGUGAUAAAUUAAUUAGCCACUGCUACCACAUAACCCAGGGUGCGGAAACCUGAACCCAGCACUGC----- .((((..............(....)...(((((.(((((((.........))))))).))))).........))))((((.(((....))).))))........----- ( -30.80, z-score = -1.58, R) >droSec1.super_1 11123168 104 - 14215200 UUGGGGAAAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUAGUGAUAAAUUAAUUAGCCACUGCUAGCACAUAACCCAGGGUGCGGAAACCUAAACCCAGCUCUGC----- ....................(((((.(((((((.(((((((.........))))))).))))).))..........((((..(....)....)))).)))))..----- ( -35.10, z-score = -2.63, R) >droYak2.chr2R 5582238 104 + 21139217 UUGGGAAAAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUGGUGAUAAAUUAAUUAGCCACUGCUACCACAUAACCCAGGGUGCGGAAACCUGAACCUUGCUCUGC----- ....................(((((...(((((.(((((((.........))))))).)))))............(((((.(((....))).))))))))))..----- ( -30.50, z-score = -1.28, R) >droEre2.scaffold_4845 7853528 104 - 22589142 UUAGGAAAAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUGAUGAUAAAUUAAUUAGCCACAGCUACCACAUAACCCAGGGUGCGGAAACCUGUACCUAGCUCUGC----- ....................(((((...(((.(.(((((((.........))))))).).))).............((((((((....)))))))).)))))..----- ( -31.30, z-score = -2.39, R) >droAna3.scaffold_13266 9322263 91 + 19884421 ---------CACAUUGAACAGUAGCGGACAC-UAGACUGGUGAUAAACUAAUUAACCAUUGCCACCACAUAAUCC---GUUGGAAAACCCGAUCUCAGCUGACU----- ---------.........((((((((((...-.....(((..((.............))..)))........)))---)))((.....)).......))))...----- ( -16.21, z-score = -0.80, R) >dp4.chr3 16435087 98 - 19779522 -----------UUCUGAUGGUCUUGUGCAGCGGGGACGGGCGAUAAAUUAAUUAAGCAUUGUUAAUACAUAAUAUAAUUCGCGGCGAUAGGUGUUUUAUAAUCCAAAUU -----------......(((...(((((..((....)).)).....((((((........)))))))))...(((((..(((........)))..)))))..))).... ( -15.40, z-score = 1.40, R) >consensus UUGGG_AAAAAAAUUAAGAGGGAGCAGCAGCGGAGGCUGGUGAUAAAUUAAUUAGCCACUGCUACCACAUAACCCAGGGUGCGGAAACCUGAACCCAGCUCUGC_____ ....................(((((...(((((.(((((((.........))))))).))))).............((((.(((....))).)))).)))))....... (-15.96 = -18.26 + 2.29)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:29 2011