| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,569,595 – 13,569,697 |
| Length | 102 |
| Max. P | 0.606224 |
| Location | 13,569,595 – 13,569,697 |
|---|---|
| Length | 102 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.81 |
| Shannon entropy | 0.37769 |
| G+C content | 0.53870 |
| Mean single sequence MFE | -28.66 |
| Consensus MFE | -13.87 |
| Energy contribution | -14.55 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.606224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13569595 102 - 21146708 --AUCAGAUCAGAGUCCA--AGCU-CCACCAAAACUGGCAGCCAGUCGGGCUCCAAAAG--------GCAACAUC-----CACUACACGCCACUCGAAUCCACCUGUUGCCACUUUGUUC --....((.((((((...--....-..........(((.((((.....)))))))...(--------((((((..-----.......((.....))........))))))))))))).)) ( -23.13, z-score = -1.15, R) >dp4.chr3 9138780 106 + 19779522 AUCAGAGACAAGAGUCCAAAAGCUACAGCCAGA-CAGCUAGCCAGCUUGACUCCAUAAG--------GCAACAUC-----CACUUGAGUCCACUCGAGUCCACCUGUUGCCACUUGUUUC ....((((((((((((...(((((.((((....-..))).)..)))))))))).....(--------((((((..-----.(((((((....))))))).....)))))))..))))))) ( -36.30, z-score = -4.76, R) >droPer1.super_4 1192855 106 + 7162766 AUCAGAGACAAGAGUCCAAAAGCUACAGCCAGA-CAGCUAGCCAGCUUGACUCCAUAAG--------GCAACAUC-----CACUUGAGUCCACUCGAGUCCACCUGUUGCCCCUUGUUUC ....((((((((((((...(((((.((((....-..))).)..)))))))))).....(--------((((((..-----.(((((((....))))))).....)))))))..))))))) ( -35.40, z-score = -4.68, R) >droSim1.chr2R 12306089 102 - 19596830 --AUCAGAUCAGAGUCCA--AGCU-CCACCAAAGCUGGCAGCCAGUCGGGCUCCAAAAG--------GCAACAUC-----CACUACACGCCACUCGAAUCCACCUGUUGCCACUUCGUUC --.........((((((.--((((-.......))))(((.....))))))))).....(--------((((((..-----.......((.....))........)))))))......... ( -23.13, z-score = -0.95, R) >droSec1.super_1 11068637 102 - 14215200 --AUCAGAUCAGAGUCCA--AGCU-CCACCAAAGCUGGCAGCCAGUCGGGCUCCAAAAG--------GCAACAUC-----CACUAUACGCCACUAGAAUCCACCUGUUGGCACUACGUUC --.........((((((.--((((-.......))))(((.....))))))))).....(--------....)...-----........((((.(((.......))).))))......... ( -23.20, z-score = -0.52, R) >droYak2.chr2R 5525105 104 + 21139217 --AUCAGAGCAGAGUCCACCAGCU-CCACCAAAGCUGGCAGCCAGUCGGGCUCCAAAAG--------GCAACAUC-----CACUACACGCCACUCGAAUCCACCUGUUGCCACUCCGUUC --....((((.((((...((((((-.......)))))).((((.....))))......(--------((((((..-----.......((.....))........))))))))))).)))) ( -28.53, z-score = -2.34, R) >droEre2.scaffold_4845 7798966 102 - 22589142 --AUCAGAGCAGAGUCCA--AGCU-CCACUUAAUCUGGCAGCCAGUCGGGCUCCAAAAG--------GCAACAUC-----CACUACACGCCACUCGAAUCCACCUGUUGCCACUCCGUUC --....((((.((((...--....-..........(((.((((.....)))))))...(--------((((((..-----.......((.....))........))))))))))).)))) ( -25.23, z-score = -1.60, R) >droAna3.scaffold_13266 9270934 113 + 19884421 -----GGGACAGAGUCCA--AGCUGCCAUCAAAUCGGGCAGCCAGUGGGGCUCCAAAAGGCAAAACAGCAACAUCAAAGGCACUCCAAGCCACUCGAGUCCACCUGUUGCCACUCGUUGC -----(((...((((((.--.((((((.........)))))).....)))))).....((((..((((.....((...(((.......)))....))......)))))))).)))..... ( -34.40, z-score = -0.65, R) >consensus __AUCAGAUCAGAGUCCA__AGCU_CCACCAAAGCUGGCAGCCAGUCGGGCUCCAAAAG________GCAACAUC_____CACUACACGCCACUCGAAUCCACCUGUUGCCACUUCGUUC ...........((((((....(((.((.........)).))).....))))))..............((((((...............................)))))).......... (-13.87 = -14.55 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:25 2011