| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,553,249 – 13,553,343 |
| Length | 94 |
| Max. P | 0.847461 |
| Location | 13,553,249 – 13,553,343 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 67.81 |
| Shannon entropy | 0.65403 |
| G+C content | 0.32892 |
| Mean single sequence MFE | -12.87 |
| Consensus MFE | -5.87 |
| Energy contribution | -6.15 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13553249 94 + 21146708 --ACCAUCGCCCAUCUCUAGUCUCUCUUU--UUGAUGUCUUGUGCAUUCGACAUCGUUUAG-UUUUGCUGU--AA-AAUAGUAAGUUUAUUGUGAAAUAUCA-- --....((((...............((..--.(((((((..........)))))))...))-.((((((((--..-.))))))))......)))).......-- ( -14.00, z-score = -0.90, R) >droGri2.scaffold_15245 4887462 76 - 18325388 ----------------UUAGUCCUCUUUUCUUUGAUGUCUUGUGAAU--GACAUCG-------UUUGCUGU--AAUAAUUGUAAGUUU-UAUUAAAAUACCGUG ----------------.................((((((........--)))))).-------(((((...--.......)))))...-............... ( -9.10, z-score = -0.82, R) >droMoj3.scaffold_6496 11234362 77 - 26866924 ----------------UUAUUCCUCUUUUCUUUGAUGUCUUGCGAAC--GACAUCGU------UUUGCUGU--AAUAAAUGUAAGUUU-UUAUGAAAUACAACG ----------------..........((((...((((((........--))))))..------(((((...--.......)))))...-....))))....... ( -9.60, z-score = -0.24, R) >droVir3.scaffold_12875 11290595 77 + 20611582 ----------------UUAUUCCUCUUUUCUUUGAUGUCUUGCGAAU--GACAUCGU------UUUGCUGU--AAUAAUUGUAAGUUA-UUUUGAAAUACCGUG ----------------.................((((((........--))))))((------((((..((--(((........))))-)..))))))...... ( -11.30, z-score = -1.55, R) >droWil1.scaffold_180701 1105346 92 - 3904529 --AACGUUACACAACACCGUUCUUUUCAG--AUGUUGCCUUGCAUAUAAAACAUCGUUCCUUUUUUGCAGUUUAAUAAUAGUAAGUAUUAUUUGCA-------- --..........................(--(((((.............))))))..........(((((..(((((........))))).)))))-------- ( -9.72, z-score = 0.57, R) >droPer1.super_4 1176768 98 - 7162766 AAUAUAUCAAAACGCUUCGUCUCCUCUCUUUUAGAUGUCUUGUGCAUUCGACAUCGUUU---UUUUGCUGU--AAAAAUAGUAAGUUUAUU-UGAUUUAACGUG ..((.((((((......................((((((..........))))))....---.((((((((--....))))))))....))-)))).))..... ( -15.50, z-score = -1.32, R) >dp4.chr3 9122718 98 - 19779522 AAUAUAUCAAAACGCGUCGUCUCCUCUCUUUUAGAUGUCUUGUGCAUUCGACAUCGUUU---UUUUGCUGU--AAAAAUAGUAAGUUUAUU-UGAUUUAACGUG ............(((((.(((............((((((..........))))))....---.((((((((--....))))))))......-.)))...))))) ( -17.00, z-score = -1.48, R) >droEre2.scaffold_4845 7782740 94 + 22589142 --ACCAUCGGCCAUCUCUAGUCUCUCUUU--UUGAUGUCUUGUGCAUUCGACAUCGUUUAG-UUUUGCUGU--AA-AAUAGUAAGUUUAUUGUGAAAUAUUA-- --......(((........))).......--..((((((..........)))))).....(-(((..(.((--((-(........))))).)..))))....-- ( -13.40, z-score = -0.11, R) >droYak2.chr2R 5508748 94 - 21139217 --ACCAUCGCCCAUCUCUAGUCUCUCUUU--UUGAUGUCUUGUGCAUUCGACAUCGUUUAG-UUUUGCUGU--AA-AAUAGUAAGUUUAUUGUGAAAUAUUA-- --....((((...............((..--.(((((((..........)))))))...))-.((((((((--..-.))))))))......)))).......-- ( -14.00, z-score = -0.99, R) >droSec1.super_1 11052513 94 + 14215200 --ACCAUCGCCCAUCUCUAGUCUCUCUUU--UUGAUGUCUUGUGCAUUCGACAUCGUUUAG-UUUUGCUGU--AA-AAUAGUAAGUUUAUUGUGAAAUAUCA-- --....((((...............((..--.(((((((..........)))))))...))-.((((((((--..-.))))))))......)))).......-- ( -14.00, z-score = -0.90, R) >droSim1.chr2R 12289941 94 + 19596830 --ACCAUCGCCCAUCUCUAGUCUCUCUUU--UUGAUGUCUUGUGCAUUCGACAUCGUUUAG-UUUUGCUGU--AA-AAUAGUAAGUUUAUUGUGAAAUAUCA-- --....((((...............((..--.(((((((..........)))))))...))-.((((((((--..-.))))))))......)))).......-- ( -14.00, z-score = -0.90, R) >consensus __ACCAUCGCCCAUCUCUAGUCUCUCUUU__UUGAUGUCUUGUGCAUUCGACAUCGUUU___UUUUGCUGU__AA_AAUAGUAAGUUUAUUGUGAAAUAUCA__ .................................((((((..........))))))........(((((............)))))................... ( -5.87 = -6.15 + 0.27)
| Location | 13,553,249 – 13,553,343 |
|---|---|
| Length | 94 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 67.81 |
| Shannon entropy | 0.65403 |
| G+C content | 0.32892 |
| Mean single sequence MFE | -12.11 |
| Consensus MFE | -6.67 |
| Energy contribution | -6.60 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.76 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.847461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13553249 94 - 21146708 --UGAUAUUUCACAAUAAACUUACUAUU-UU--ACAGCAAAA-CUAAACGAUGUCGAAUGCACAAGACAUCAA--AAAGAGAGACUAGAGAUGGGCGAUGGU-- --....................((((((-..--...((....-......((((((..........))))))..--.........(((....)))))))))))-- ( -11.70, z-score = -0.07, R) >droGri2.scaffold_15245 4887462 76 + 18325388 CACGGUAUUUUAAUA-AAACUUACAAUUAUU--ACAGCAAA-------CGAUGUC--AUUCACAAGACAUCAAAGAAAAGAGGACUAA---------------- ...(((....(((((-(.........)))))--).......-------.((((((--........))))))............)))..---------------- ( -8.50, z-score = -1.52, R) >droMoj3.scaffold_6496 11234362 77 + 26866924 CGUUGUAUUUCAUAA-AAACUUACAUUUAUU--ACAGCAAA------ACGAUGUC--GUUCGCAAGACAUCAAAGAAAAGAGGAAUAA---------------- .((((((....((((-(........))))))--)))))...------..((((((--........)))))).................---------------- ( -13.80, z-score = -2.15, R) >droVir3.scaffold_12875 11290595 77 - 20611582 CACGGUAUUUCAAAA-UAACUUACAAUUAUU--ACAGCAAA------ACGAUGUC--AUUCGCAAGACAUCAAAGAAAAGAGGAAUAA---------------- .....((((((..((-(((.......)))))--........------..((((((--........))))))..........)))))).---------------- ( -10.90, z-score = -2.46, R) >droWil1.scaffold_180701 1105346 92 + 3904529 --------UGCAAAUAAUACUUACUAUUAUUAAACUGCAAAAAAGGAACGAUGUUUUAUAUGCAAGGCAACAU--CUGAAAAGAACGGUGUUGUGUAACGUU-- --------(((((((((((.....)))))))....))))..........(((((....(((((((.((....(--((....)))...)).))))))))))))-- ( -16.30, z-score = -0.82, R) >droPer1.super_4 1176768 98 + 7162766 CACGUUAAAUCA-AAUAAACUUACUAUUUUU--ACAGCAAAA---AAACGAUGUCGAAUGCACAAGACAUCUAAAAGAGAGGAGACGAAGCGUUUUGAUAUAUU ........((((-((....(((.........--.........---....((((((..........)))))).........(....).)))...))))))..... ( -13.30, z-score = -0.51, R) >dp4.chr3 9122718 98 + 19779522 CACGUUAAAUCA-AAUAAACUUACUAUUUUU--ACAGCAAAA---AAACGAUGUCGAAUGCACAAGACAUCUAAAAGAGAGGAGACGACGCGUUUUGAUAUAUU ........((((-((....(((....(((((--......)))---))..((((((..........)))))).....))).(....).......))))))..... ( -12.90, z-score = -0.23, R) >droEre2.scaffold_4845 7782740 94 - 22589142 --UAAUAUUUCACAAUAAACUUACUAUU-UU--ACAGCAAAA-CUAAACGAUGUCGAAUGCACAAGACAUCAA--AAAGAGAGACUAGAGAUGGCCGAUGGU-- --....................((((((-..--.........-......((((((..........))))))..--.......(.(((....))).)))))))-- ( -10.70, z-score = -0.01, R) >droYak2.chr2R 5508748 94 + 21139217 --UAAUAUUUCACAAUAAACUUACUAUU-UU--ACAGCAAAA-CUAAACGAUGUCGAAUGCACAAGACAUCAA--AAAGAGAGACUAGAGAUGGGCGAUGGU-- --....................((((((-..--...((....-......((((((..........))))))..--.........(((....)))))))))))-- ( -11.70, z-score = -0.41, R) >droSec1.super_1 11052513 94 - 14215200 --UGAUAUUUCACAAUAAACUUACUAUU-UU--ACAGCAAAA-CUAAACGAUGUCGAAUGCACAAGACAUCAA--AAAGAGAGACUAGAGAUGGGCGAUGGU-- --....................((((((-..--...((....-......((((((..........))))))..--.........(((....)))))))))))-- ( -11.70, z-score = -0.07, R) >droSim1.chr2R 12289941 94 - 19596830 --UGAUAUUUCACAAUAAACUUACUAUU-UU--ACAGCAAAA-CUAAACGAUGUCGAAUGCACAAGACAUCAA--AAAGAGAGACUAGAGAUGGGCGAUGGU-- --....................((((((-..--...((....-......((((((..........))))))..--.........(((....)))))))))))-- ( -11.70, z-score = -0.07, R) >consensus __UGAUAUUUCACAAUAAACUUACUAUU_UU__ACAGCAAAA___AAACGAUGUCGAAUGCACAAGACAUCAA__AAAGAGAGACUAGAGAUGGGCGAUGGU__ .................................................((((((..........))))))................................. ( -6.67 = -6.60 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:19 2011