| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,542,140 – 13,542,211 |
| Length | 71 |
| Max. P | 0.972343 |
| Location | 13,542,140 – 13,542,211 |
|---|---|
| Length | 71 |
| Sequences | 5 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 88.83 |
| Shannon entropy | 0.18493 |
| G+C content | 0.32603 |
| Mean single sequence MFE | -14.34 |
| Consensus MFE | -14.00 |
| Energy contribution | -14.84 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.972343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13542140 71 + 21146708 ------UCAUAUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUGGUUCUAUGGCAAACAAAUUUCUAUUGUUCUUAGGC ------.......((((((((((((((((..........))))))))))))))))......((((.......)))). ( -17.50, z-score = -3.30, R) >droSim1.chr2R 12278954 71 + 19596830 ------UCAUAUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUUGUUCUAUGGCAAACAAAUUUCUAUUGUUUCAAGGC ------.......((((((((((((.(((...........)))))))))))))))...................... ( -12.60, z-score = -1.25, R) >droSec1.super_1 11041636 71 + 14215200 ------UCAUAUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUUGUUCUAUGGCAAACAAAUUUCUAUUGUUUUAAGGC ------.......((((((((((((.(((...........)))))))))))))))...................... ( -12.60, z-score = -1.42, R) >droYak2.chr2R 5497405 71 - 21139217 ------UCAUAUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUGCAUCUAUGGCAAACAAUUUUCUAUUGUUCUAAGGC ------..........(((.(((((.((((..((((...((((.......)))).)))).....))))))))).))) ( -12.20, z-score = -0.76, R) >droEre2.scaffold_4845 7771370 77 + 22589142 UCAUACACUCGUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUGCUUCUACGGCAAACAAUUUUCUAUUGUUCCAAGGC ..((((....))))(((((((((((.(((..........))).)))))))))))(((((.....)))))........ ( -16.80, z-score = -2.14, R) >consensus ______UCAUAUAUUUGCUGUGGGAUCAAUUUAUUGGUUUUGGUUCUAUGGCAAACAAAUUUCUAUUGUUCUAAGGC .............((((((((((((((((..........))))))))))))))))...................... (-14.00 = -14.84 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:16 2011