| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,536,853 – 13,536,909 |
| Length | 56 |
| Max. P | 0.773899 |
| Location | 13,536,853 – 13,536,909 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 72 |
| Reading direction | forward |
| Mean pairwise identity | 72.44 |
| Shannon entropy | 0.43727 |
| G+C content | 0.43240 |
| Mean single sequence MFE | -10.87 |
| Consensus MFE | -5.74 |
| Energy contribution | -5.78 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13536853 56 + 21146708 -------AUAUCAGCUGGGUUUGUAGCAUUUCAUAUGCC------CUCUUACUUUCCGAGUACCCAUUG--- -------....(((.(((((.....((((.....)))).------(((.........))).))))))))--- ( -9.70, z-score = -0.99, R) >droSim1.chr2R 12273699 56 + 19596830 -------AUAAAAGCUCGGUUUGCAGCAUUUCAUAUGCC------CUCUUACUUUCCGAGUACCCCUUG--- -------......((((((......((((.....)))).------..........))))))........--- ( -10.13, z-score = -2.15, R) >droSec1.super_1 11036364 62 + 14215200 -------AUAUAAGCUCGGUUUGUAGCAUUUCAUAUGCCUAUAUGCAUAUACUUUCCGAGUACCCCUUG--- -------......((((((...(((........(((((......))))))))...))))))........--- ( -13.70, z-score = -2.67, R) >droYak2.chr2R 5492020 59 - 21139217 -------UUUAAUACUCGGUUCGAUGCAUUUCAUAUACC------CUAUGAACUUCCGAGUACCCCUCGCAA -------.....(((((((..........((((((....------.))))))...))))))).......... ( -10.72, z-score = -2.54, R) >droEre2.scaffold_4845 7766141 63 + 22589142 UUUAUAACUAGAAGCUCGGUUCGGAGCACUUCAUAUACC------CCUCGACUUUCCGAGUACCCCUUG--- .............((((((.(((..(.............------)..)))....))))))........--- ( -10.12, z-score = -0.53, R) >consensus _______AUAAAAGCUCGGUUUGUAGCAUUUCAUAUGCC______CUCUUACUUUCCGAGUACCCCUUG___ .............((((((....................................))))))........... ( -5.74 = -5.78 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:13 2011