| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,504,250 – 13,504,349 |
| Length | 99 |
| Max. P | 0.848033 |
| Location | 13,504,250 – 13,504,349 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 71.33 |
| Shannon entropy | 0.59355 |
| G+C content | 0.41375 |
| Mean single sequence MFE | -23.89 |
| Consensus MFE | -9.46 |
| Energy contribution | -8.75 |
| Covariance contribution | -0.71 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848033 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13504250 99 + 21146708 -------AUAUGACAUUUUUCCUUCUGCACUGUGGCAAGAGUAGCU----ACUGUAUCCAGCGUAGCUCGCUCUAAUCCGCUGAAGGUAGAUCAAAUCGUUCAUCCUCCA -------..((((....(((...(((((...((((..(((((((((----((.((.....)))))))).)))))...)))).....)))))..)))....))))...... ( -25.30, z-score = -1.77, R) >droSim1.chr2R 12241836 106 + 19596830 UUCUAUUAUAUAACAUUUUUCCUUCUGCACUGUGGCAAGAGUGGUU----ACUAUUUCCAGCGUAGCUCGCUCUAAUCCGCAGAAGGUAGAUCAAAUCGUUCAUCCUCCA .......................(((((.((((((..(((((((((----((..........))))).))))))...))))))...)))))................... ( -26.60, z-score = -3.00, R) >droSec1.super_1 11003381 106 + 14215200 UUCUAUUAUAUAACAUUUUUCCUUCUGCACUGUGGCAAGAGUGGCU----ACUAUUUCCAGCGUAGCUCGCUCUAAUCCGCAGAAGGUAGAUCAAAUCGUUCAUCCUCCA .......................(((((.((((((..(((((((((----((..........))))).))))))...))))))...)))))................... ( -29.00, z-score = -3.50, R) >droYak2.chr2R 5457870 99 - 21139217 -------UGAAAACAUUUUUCCUUCUGCACUGUGGCAAGAGUGGUU----ACUAUUUCCAGCGUAGCUCGCUCUAAUCCGCAGAAGGUAGAUCAAAUCGUUCAUCCUCCA -------((((...((((.....(((((.((((((..(((((((((----((..........))))).))))))...))))))...)))))..))))..))))....... ( -27.70, z-score = -2.83, R) >droEre2.scaffold_4845 7732825 97 + 22589142 ---------CAAACAUUUUUCCUUCUGCACUGUGGCAAGAGUGGUU----ACUAUUCCCAGCGUAGCUCGCUCUAAUCCGCAGAAGGUAGAUCAAAUCGUUCAUCCUCCA ---------..............(((((.((((((..(((((((((----((..........))))).))))))...))))))...)))))................... ( -26.60, z-score = -3.17, R) >dp4.chr3 9070950 104 - 19779522 ----UAUUUAUAUAGUUUUUCCUUCUGCGAUUGGGCAAGAGUUGUUGU--GUAUUUCCCAAGCCUACAAACUCUAAUCCGCAAAAGGUAGAUCAAAUCGUUCGCUCUCCU ----..........(.(((.((((.(((....(((..((((((((.(.--((.........))).)).))))))..)))))).)))).))).)................. ( -15.70, z-score = 0.48, R) >droPer1.super_4 1130876 104 - 7162766 ----UAUUUAUAUAGUUUUUCCUUCUGCGAUUGGGCAAGAGUUGUUGU--GUAUUUCCCAAGCCUACAAACUCUAAUCCGCAAAAGGUAGAUCAAAUCGUUCGCUCUCCU ----..........(.(((.((((.(((....(((..((((((((.(.--((.........))).)).))))))..)))))).)))).))).)................. ( -15.70, z-score = 0.48, R) >droWil1.scaffold_180569 464216 96 + 1405142 ---------UUGUACCUUCAGCUUAUGCACU--GGCAAGAGUUUUUG---GUAAUUUUAAUAAUCAUUAACUCUAAUCCGCUGAAGGUAGAUUAAAUCGUUCAUUCUUAC ---------.(.((((((((((...(((...--.)))((((((..((---((.((....)).))))..)))))).....)))))))))).)................... ( -27.80, z-score = -4.76, R) >droVir3.scaffold_12875 11227358 97 + 20611582 ------------AUAUAGAGCCUUCUGCGCUUGGGCAAGAGUUGCUGUGUACAUUUUCCAGCCU-GCUAACUCUAAUCCGCUGAAGGUAGAUAAAAUCGUUCAUUCUCAU ------------.......((((((.(((.(((((....(((.((((.(........)))))..-)))...)))))..))).))))))...................... ( -22.40, z-score = -0.27, R) >droMoj3.scaffold_6496 11160234 104 - 26866924 ---AUAAUAUUCAUAUUAACCUUUCUGCGAUUGGGCAAGAGUUGCUGUGUAU-UUAUUUGGCCU-G-UAACUCUAAUCCGCUGAAGGUAGAUCAAAUCGUUCAUUCUCAU ---...............((((((..((....(((..((((((((.(.((..-.......))).-)-)))))))..))))).))))))...................... ( -19.30, z-score = -0.09, R) >droGri2.scaffold_15245 4815373 105 - 18325388 ---AUAACAUUUGUGGGUAGCCUUUAGCGCUUGGGCAAGAGUUGCUGUGUACAUU-UCCAGCCU-GCUAACUCUAAUCCGCUGAAGGUAGAUCAAAUCGUUCAUUCUUAU ---..((((((((......((((((((((.(((((....(((.((((.(......-.)))))..-)))...)))))..))))))))))....))))).)))......... ( -26.70, z-score = -0.67, R) >consensus _______UUAUAACAUUUUUCCUUCUGCACUGGGGCAAGAGUUGUUG___ACAAUUUCCAGCCUAGCUAACUCUAAUCCGCAGAAGGUAGAUCAAAUCGUUCAUUCUCCA .......................(((((.....((..((((((((....................)).))))))...)).......)))))................... ( -9.46 = -8.75 + -0.71)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:12 2011