| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,492,036 – 13,492,097 |
| Length | 61 |
| Max. P | 0.719785 |
| Location | 13,492,036 – 13,492,097 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 65.70 |
| Shannon entropy | 0.65540 |
| G+C content | 0.52323 |
| Mean single sequence MFE | -15.41 |
| Consensus MFE | -9.83 |
| Energy contribution | -9.71 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.64 |
| Mean z-score | -0.24 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.719785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13492036 61 + 21146708 -GCUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUC-UCCCAA------ -((.........(((((.......))))).....((((((.....)))))).))..-......------ ( -15.00, z-score = -0.31, R) >droSim1.chr2R 12229323 62 + 19596830 -AAUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAUAUCUUCAUUCUAACGCUCCUCCCCA------ -...........(((((.......)))))..................................------ ( -10.60, z-score = 0.76, R) >droSec1.super_1 10991368 61 + 14215200 -GAUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUC-UCCCAA------ -((..((.....(((((.......))))).....((((((.....)))))).))..-))....------ ( -15.70, z-score = -0.60, R) >droYak2.chr2R 5445511 61 - 21139217 -AUUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUC-UCCCAA------ -...........(((((.......)))))((.(.((((((.....)))))).).))-......------ ( -14.70, z-score = -0.29, R) >droEre2.scaffold_4845 7720613 61 + 22589142 -AAUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUC-UCCCAA------ -...........(((((.......)))))((.(.((((((.....)))))).).))-......------ ( -14.70, z-score = -0.31, R) >droAna3.scaffold_13266 9195369 68 - 19884421 -AGGUUCUGAAAAGGUUCUCCGGCUGGGGGGCCAACGAAAGCUAAUUUUAGUCGCAUAACGGACAACUG -.(((((((....((((((((....))))))))...(...((((....))))..)....))))..))). ( -16.70, z-score = -0.19, R) >anoGam1.chrU 31105530 62 + 59568033 UCACUGUUUCCGCCCGGGUUCGAACCGGGGACCUUCUGCGUGUGAAGCAGACGUGAUAACCA------- ((((........(((((.......))))).....(((((.......))))).))))......------- ( -20.50, z-score = -0.75, R) >consensus _AAUUGCCGAAACCCGGGAUUGAACCGGGGACCUUUAGAUCUUCAGUCUAACGCUC_UCCCAA______ ............(((((.......))))).....((((((.....)))))).................. ( -9.83 = -9.71 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:10 2011