| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,486,376 – 13,486,435 |
| Length | 59 |
| Max. P | 0.773255 |
| Location | 13,486,376 – 13,486,435 |
|---|---|
| Length | 59 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | reverse |
| Mean pairwise identity | 66.44 |
| Shannon entropy | 0.66663 |
| G+C content | 0.37612 |
| Mean single sequence MFE | -9.53 |
| Consensus MFE | -5.58 |
| Energy contribution | -5.25 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 2.14 |
| Mean z-score | -0.43 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.65 |
| SVM RNA-class probability | 0.773255 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13486376 59 - 21146708 AAUUCGGCUGUCAAUCAAGGGGGAAC-UUUUUCCUCCACUUUUUGGUUUUGAGAAUAAAG .((((..(....(((((((((((((.-...))))))).....))))))..).)))).... ( -11.90, z-score = -0.11, R) >droEre2.scaffold_4845 7714927 58 - 22589142 AAAUUCGCUGCCCAUCAAGGGGAAAC-UUUUUGCUCCACUCUUUCGUUUUUAGAAUAAG- ..((((....(((.....)))(((((-..................)))))..))))...- ( -5.77, z-score = 1.14, R) >droYak2.chr2R 5439862 53 + 21139217 AAUUCGGCUGUCAAUCAAGGGGGAACUUUUUUCCUCUAUUUUUUUGUUUUCAG------- .......(((.(((...((((((((....))))))))......)))....)))------- ( -8.20, z-score = -0.87, R) >droSec1.super_1 10985689 59 - 14215200 AAUUCGGCUGUCAAUCAAGGGGGAAC-UUUUUCCUCCACUUUUUGGUUUUAAGAGUAAAG ..................(((((((.-...)))))))((((((.......)))))).... ( -12.50, z-score = -0.59, R) >droSim1.chr2R 12222593 60 - 19596830 AAUUCGGCUGUCAAUCAAGGGGGAACUUUUCCUCCACUUUUUUUGGUUUUGAGCAUAAAG ......(((...((((((((((((.....)))))).......))))))...)))...... ( -12.81, z-score = -0.70, R) >droVir3.scaffold_12875 11204769 59 - 20611582 AAGUCAUCCACCAUUCAAUUAGUCUCGUUUUUAUUAAAAUAAUGCAUAGUUGACCAGAG- ..............(((((((((.(..((((....))))..).)).)))))))......- ( -6.00, z-score = -1.47, R) >consensus AAUUCGGCUGUCAAUCAAGGGGGAAC_UUUUUCCUCCACUUUUUGGUUUUGAGAAUAAA_ ..................(((((((.....)))))))....................... ( -5.58 = -5.25 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:09 2011