| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,485,977 – 13,486,079 |
| Length | 102 |
| Max. P | 0.514188 |
| Location | 13,485,977 – 13,486,079 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 81.35 |
| Shannon entropy | 0.33397 |
| G+C content | 0.56065 |
| Mean single sequence MFE | -35.33 |
| Consensus MFE | -17.34 |
| Energy contribution | -19.87 |
| Covariance contribution | 2.53 |
| Combinations/Pair | 1.03 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.514188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13485977 102 - 21146708 UAUCGAGCCGGGGCCGGUGAUUUAUG-------CGCACUCGGACUG---GACUAGACUCAACCAGUCCCUUCCAAUCUGACAGCCACUGACUCAU---AGCCCGGUAGAUAUCAC ((((..((((((....((((.(((((-------.((..(((((.((---((...((((.....))))...)))).)))))..)))).))).))))---..)))))).)))).... ( -34.70, z-score = -2.33, R) >droAna3.scaffold_13266 9189433 113 + 19884421 --UCGGGCCAGGGCCAAUGAUUUGCGGACCUGACAGAACCGACCUGACUGACCAAACCAAACCAGUCUCUCCCAGUCUGACAGCCGCUGACUCAUCUAGAGCCGGUACAGGUCGC --...(((....)))........(((.(((((.((((........(((((............)))))........))))......((((.(((.....))).)))).)))))))) ( -33.19, z-score = -0.22, R) >droSim1.chr2R 12222194 102 - 19596830 UAUCGAGCCGGGGCCGGUGAUUUAUG-------CGCACCCGGACUG---GACUAGACUCAACCAGUCCCUCCCAGUCUGACAGCCACUGACUCAU---AACCCGGUAGAUAUCAC ((((..((((((....((((.(((((-------.((...(((((((---(....((((.....))))....))))))))...)))).))).))))---..)))))).)))).... ( -37.70, z-score = -2.97, R) >droSec1.super_1 10985290 102 - 14215200 UAUCGAGCCGGGGCCGGUGAUUUAUG-------CGCACCCGGACUG---GACUAGACUCAACCAGUCCCUCCCAGUCUGACAGCCACUGACUCAU---AACCCGGUAGAUAUCAC ((((..((((((....((((.(((((-------.((...(((((((---(....((((.....))))....))))))))...)))).))).))))---..)))))).)))).... ( -37.70, z-score = -2.97, R) >droYak2.chr2R 5439463 102 + 21139217 UAUCGAGCCGGGACCGGUGAUUUAUG-------CGCACCC-GACCG---GACUAGACUCAACCAGUCUGUCCCAGUCUGACAGGCUGUGACUCAU--AAACCCGGUAGAUAUCAC ((((..((((((.(((((........-------.......-.))))---)....((.(((..(((((((((.......)))))))))))).))..--...)))))).)))).... ( -37.09, z-score = -2.85, R) >droEre2.scaffold_4845 7714547 101 - 22589142 CAUCGAGCCGGAACCGGUGAUUUAUG-------CGCACCC-GACUG---GACUAGAUACAACUAGUCCAUCCCAGUCUGACAGCCUCUGAGUCAU---GACCCGGUGGAUAUCAC .(((..(((((....((((.......-------..)))).-((.((---((((((......))))))))))...(((((((.........)))).---)))))))).)))..... ( -31.60, z-score = -1.59, R) >consensus UAUCGAGCCGGGGCCGGUGAUUUAUG_______CGCACCCGGACUG___GACUAGACUCAACCAGUCCCUCCCAGUCUGACAGCCACUGACUCAU___AACCCGGUAGAUAUCAC ((((..((((((....((((...................(((((((...((((.(......).)))).....))))))).(((...)))..)))).....)))))).)))).... (-17.34 = -19.87 + 2.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:08 2011