Locus 4493

Sequence ID	dm3.chr2R
Location	13,462,821 – 13,462,878
Length	57
Max. P	0.969136

overview

Window 6

Location	13,462,821 – 13,462,878
Length	57
Sequences	5
Columns	70
Reading direction	reverse
Mean pairwise identity	64.44
Shannon entropy	0.61341
G+C content	0.36920
Mean single sequence MFE	-19.20
Consensus MFE	-3.52
Energy contribution	-6.36
Covariance contribution	2.84
Combinations/Pair	1.32
Mean z-score	-3.57
Structure conservation index	0.18
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.81
SVM RNA-class probability	0.969136
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13462821 57 - 21146708
-----------UAGUUUCUGCUAAACUGCA--UUGAAUUUGCUUUCUAGCCAAGACGUAAUCCUUUGGAA
-----------..((((..((((....(((--.......)))....))))..))))....(((...))). ( -10.20, z-score =  -0.85, R)
>droYak2.chr2R 5416011 63 + 21139217
-----UCCCUGGAAUUUCUGCUAAACUGCA--UAGCAUUUGCUAUCUGGCUUUGAAGAAAUUCUUCGGAA
-----(((..(((((((((..(((((((.(--((((....))))).))).)))).)))))))))..))). ( -20.70, z-score =  -4.01, R)
>droSec1.super_1 10962292 63 - 14215200
-----UCCAUGUGAUUUCUGCUAAACUGCA--UUGCAUUUGCUUUAUAGCCAAGAAGAAAUCAUUUGGAA
-----((((.(((((((((((((....(((--.......)))....)))).....))))))))).)))). ( -20.40, z-score =  -3.91, R)
>droSim1.chr2R 12198781 63 - 19596830
-----UCCAUGUGAUUUCUGCUAAACUGCA--UUGCAUUUGCUUUAUAGCCAAGAAGAAAUCAUUUGGAA
-----((((.(((((((((((((....(((--.......)))....)))).....))))))))).)))). ( -20.40, z-score =  -3.91, R)
>droWil1.scaffold_180569 418403 68 - 1405142
UAUCAGGCGUUUAGGAUUUAC-AGACUGUAAGUCCUGAUCGCCUUAUAAUCGCAAAUUAAUACUUGGAG-
(((.(((((.(((((((((((-.....))))))))))).))))).))).((.(((........))))).- ( -24.30, z-score =  -5.17, R)
>consensus
_____UCCAUGUAAUUUCUGCUAAACUGCA__UUGCAUUUGCUUUAUAGCCAAGAAGAAAUCCUUUGGAA
.....(((..(((((((((((((....(((.........)))....)))).....)))))))))..))). ( -3.52 =  -6.36 +   2.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:06 2011