| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,414,360 – 13,414,453 |
| Length | 93 |
| Max. P | 0.803967 |
| Location | 13,414,360 – 13,414,453 |
|---|---|
| Length | 93 |
| Sequences | 13 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 86.89 |
| Shannon entropy | 0.29630 |
| G+C content | 0.59471 |
| Mean single sequence MFE | -33.54 |
| Consensus MFE | -21.45 |
| Energy contribution | -22.28 |
| Covariance contribution | 0.84 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.803967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13414360 93 - 21146708 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGCCAAAUGCAGGCGCAGCACCUCCAAGCCCAACAACUCAUGCAGGCUCAGCA ((((((((....))))))))...((..((((.....((...(((.......)))...))........((............)).))))..)). ( -28.50, z-score = -1.58, R) >droSim1.chr2R 12151396 93 - 19596830 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGCCAAAUGCAGGCGCAGCACCUCCAAGCCCAACAGCUCAUGCAGGCUCAGCA ((((((((....))))))))...((..((((.....((...(((.......)))...))................((....)).))))..)). ( -30.80, z-score = -1.78, R) >droSec1.super_1 10914153 93 - 14215200 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGCCAAAUGCAGGCGCAGCACCUCCAAGCCCAACAGCUCAUGCAGGCUCAGCA ((((((((....))))))))...((..((((.....((...(((.......)))...))................((....)).))))..)). ( -30.80, z-score = -1.78, R) >droYak2.chr2R 5366323 93 + 21139217 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGCCAAAUGCAGGCACAGCACCUCCAAGCCCAACAGCUCAUGCAGGCUCAGCA ((((((((....))))))))...((..((((.....((...(((.......)))...))................((....)).))))..)). ( -29.70, z-score = -1.95, R) >droEre2.scaffold_4845 7641630 93 - 22589142 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAACAAAGCCAAAUGCAGGCGCAGCACCUCCAAGCCCAACAGCUCAUGCAGGCUCAGCA ((((((((....))))))))...((..((((..........(((.......)))...(((......(((......)))..))).))))..)). ( -29.40, z-score = -1.90, R) >droAna3.scaffold_13266 8899249 93 - 19884421 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACGCAGCAGAGCCAAAUGCAGGCCCAGCACCUGCAGGCCCAGCAGCUGAUGCAGGCCCAGCA ((((((((....))))))))...((..((((.....((.(.(((...((((((.......))))))))).).)).((....)).))))..)). ( -40.80, z-score = -2.64, R) >dp4.chr3 4865237 93 - 19779522 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACGCAGCAGAGCCAGAUGCAGGCCCAGCACCUGCAGGCGCAGCAGCUCCUGCAGGCCCAGCA ((((((((....))))))))...((..((((..(((...........))).))))..)).((((((((.((....)).))))))))....... ( -43.10, z-score = -2.92, R) >droPer1.super_2 5057740 93 - 9036312 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACGCAGCAGAGCCAGAUGCAGGCCCAGCACCUGCAGGCGCAGCAGCUCCUGCAGGCCCAGCA ((((((((....))))))))...((..((((..(((...........))).))))..)).((((((((.((....)).))))))))....... ( -43.10, z-score = -2.92, R) >droWil1.scaffold_181141 854758 93 + 5303230 AGAUAUCCAGCAGGAUAUCCAUAGGCUAGCAACUCAGCAAAGUCAAAUGCAGGCCCAACAUCUUCAGGCCCAGCAGCUGAUGCAGGCCCAACA .(((((((....)))))))....((((.(((..(((((.........(((.((((...........))))..))))))))))).))))..... ( -31.40, z-score = -2.97, R) >droVir3.scaffold_12875 7872498 93 + 20611582 GGAUAUCCAACAGGAUAUCCAUCGGCUGGCCACGCAGCAAAGCCAAAUGCAGGCACAGCAUCUGCAAGCGCAGCAGCUGAUGCAGGCACAACA ((((((((....))))))))...((((.((......))..))))...(((..(((((((..((((....))))..)))).)))..)))..... ( -39.50, z-score = -4.18, R) >droMoj3.scaffold_6496 6847124 93 + 26866924 GGAUAUCCAGCAGGAUAUUCAUCGGCUGGCCACCCAGCAAAGCCAAAUGCAGGCGCAGCAUUUGCAAGCGCAGCAGCUGAUGCAGGCACAGCA ((((((((....))))))))....(((((((.....(((........)))..(((((((..((((....))))..)))).))).))).)))). ( -37.00, z-score = -2.17, R) >droGri2.scaffold_15245 7614402 93 - 18325388 GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGUCAAAUGCAGGCGCAGCACUUGCAAGCCCAGCAACUAAUGCAGGCUCAGCA ((((((((....))))))))...((((((....)).(((........)))))))((.((....)).((((..(((.....))).))))..)). ( -32.40, z-score = -1.97, R) >anoGam1.chr3L 30744566 93 - 41284009 CGAUAUUCAGGCGGACAUACAGCGUCUCACCCAGCAGCAGAGUCAAAUUCAAGCCCAAACCCUGCAGGCACAGCAGCUACUGCAUGCGCAGCA .........((.((((.......))).).))..((.((((.((...............)).))))..((.((((((...)))).)).)).)). ( -19.46, z-score = 1.28, R) >consensus GGAUAUCCAGCAGGAUAUCCACCGCCUGGCCACCCAGCAAAGCCAAAUGCAGGCGCAGCACCUGCAAGCCCAGCAGCUCAUGCAGGCUCAGCA ((((((((....))))))))...(.((((((.....((...(((.......)))...)).......(((......)))......))).)))). (-21.45 = -22.28 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:01 2011