Locus 4488

Sequence ID dm3.chr2R
Location 13,412,457 – 13,412,551
Length 94
Max. P 0.697445
window6140

overview

Window 0

Location 13,412,457 – 13,412,551
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 91.28
Shannon entropy 0.16882
G+C content 0.44681
Mean single sequence MFE -25.43
Consensus MFE -23.64
Energy contribution -23.42
Covariance contribution -0.22
Combinations/Pair 1.21
Mean z-score -1.17
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.44
SVM RNA-class probability 0.697445
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 13412457 94 + 21146708
UUUGACACUGUUGGAGUUGUUUAGGCCAUGGAUACUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUUCCGAAUCCAAUAUUGUUGUUG
...((((.(((((((.(((..(((((((.(....))).)))))((((.(((....))).))))...........))).))))))).)))).... ( -27.10, z-score =  -1.60, R)
>droAna3.scaffold_13266 8897375 94 + 19884421
UUUGACACUGUUGGAGUUGUUCAGACCAUGCACGCUGUGUCUGGUGACCGUCUUGUUGUUGCUAUCCUCCCCUCCGAUCCCAAUAUUGUUGUUG
...((((.((((((..(((..(((((((.(....))).)))))(..((.........))..)............)))..)))))).)))).... ( -21.20, z-score =  -0.91, R)
>droEre2.scaffold_4845 7639630 94 + 22589142
UUUGACAUUGUUGGAGUUGUUUAGGCCAUGGAUGCUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUUCCAAAUCCGAUAUUAUUGUUG
...((((.(((((((.(((..(((((((.......)).)))))((((.(((....))).))))...........))).)))))))....)))). ( -24.80, z-score =  -0.91, R)
>droYak2.chr2R 5364392 94 - 21139217
UUUGACACUAUUGGAGUUGUUUAGGCCAUGGAUGCUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUUCCAAAUCCAAUAUUGUUGUUG
...((((.(((((((.(((..(((((((.......)).)))))((((.(((....))).))))...........))).))))))).)))).... ( -26.70, z-score =  -1.49, R)
>droSec1.super_1 10912292 94 + 14215200
UUUGACACUGUUGGAGUUGUUUAGGCCAUGGAUGCUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUUCCGAAUCCAAUAUUGUUGUUG
...((((.(((((((.(((..(((((((.......)).)))))((((.(((....))).))))...........))).))))))).)))).... ( -26.40, z-score =  -1.13, R)
>droSim1.chr2R 12149547 94 + 19596830
UUUGACACUGUUGGAGUUGUUUAGGCCAUGGAUGCUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUCCCGAAUCCAAUAUUGUUGUUG
...((((.(((((((.(((..(((((((.......)).)))))((((.(((....))).))))...........))).))))))).)))).... ( -26.40, z-score =  -1.01, R)
>consensus
UUUGACACUGUUGGAGUUGUUUAGGCCAUGGAUGCUGUGCCUGGUCACCGGUUUGCUGUUGACAUCAUCAUUUCCGAAUCCAAUAUUGUUGUUG
...((((.(((((((.(((..(((((((.(....))).)))))((((.(((....))).))))...........))).))))))).)))).... (-23.64 = -23.42 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:30:00 2011