| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,393,540 – 13,393,630 |
| Length | 90 |
| Max. P | 0.526309 |
| Location | 13,393,540 – 13,393,630 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 69.16 |
| Shannon entropy | 0.51106 |
| G+C content | 0.44101 |
| Mean single sequence MFE | -24.47 |
| Consensus MFE | -7.29 |
| Energy contribution | -10.47 |
| Covariance contribution | 3.19 |
| Combinations/Pair | 1.30 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.30 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526309 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13393540 90 - 21146708 UCGAUGUAGAUGGUCAUAGUCAAGGGAGUACAGGGCACAGAAGA-AAGAAGUAAUCACUUAUUUUUUUCUCUGCAUCAGGGAGC-UACAUCC ..(((((((.((((....(((..(......)..))).((((.((-(((((((((....))))))))))))))).)))).....)-)))))). ( -24.40, z-score = -2.47, R) >droSim1.chr2R 12130105 91 - 19596830 UCGAUGUAGAUGGGCAUAGUCAAGGUGGCACAGGGCACAGCAGA-AAGGAGUAAUCACUUCUUUUUUUUUGUGCACCUUAUAUCUUAUAUCC ..((((((((((......(((.....)))..(((((((((.(((-(((((((....))))))))))..)))))).)))..)))).)))))). ( -28.30, z-score = -3.35, R) >droSec1.super_1 10889606 91 - 14215200 UCGAUGUAGAUGGGCAUAGUCAAGGUGGCACAGGUUACAGCAGA-AAGGAGUAAUCACUUCUUUUUUUCUGUGCACCUUAUAUCCUAUAUCC ..(((((((...(((...)))((((((.(((((((....))(((-(((((((....))))))))))..))))))))))).....))))))). ( -29.90, z-score = -3.61, R) >droEre2.scaffold_4845 10122716 75 + 22589142 UCGAUAUAGAUGGGCAUAGUUAUGA-GGCACAGGGCCCAGGACACAGGGAGUUAUAACUUGGAGGGGGUACUAUCC---------------- ........(((((((...(((.((.-(((.....))))).))).((((.........))))......)).))))).---------------- ( -15.30, z-score = 0.34, R) >consensus UCGAUGUAGAUGGGCAUAGUCAAGGUGGCACAGGGCACAGCAGA_AAGGAGUAAUCACUUCUUUUUUUCUCUGCACCUUAUAUC_UAUAUCC ..(((((((((.......)))...........((((((((.(((.(((((((....))))))).))).)))))).))........)))))). ( -7.29 = -10.47 + 3.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:59 2011