| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,391,170 – 13,391,272 |
| Length | 102 |
| Max. P | 0.985704 |
| Location | 13,391,170 – 13,391,272 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.55 |
| Shannon entropy | 0.43027 |
| G+C content | 0.42174 |
| Mean single sequence MFE | -18.71 |
| Consensus MFE | -12.45 |
| Energy contribution | -12.03 |
| Covariance contribution | -0.42 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.21 |
| SVM RNA-class probability | 0.985704 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13391170 102 + 21146708 AUUCCCAUCAUUAUUUCCGAAUCAGAGUCGCAGUCAUUAAGUCUGCUCGAUGUUUUUGCAUCGAUUCUUC---GGGUCCAGAGUCUUCACUCUCUAGUCUUCGCU ...............(((((...((((((((((.(.....).))))..(((((....)))))))))))))---)))...(((((....)))))............ ( -26.20, z-score = -3.18, R) >droSim1.chr2R 12127734 102 + 19596830 AUUCCCAUCAUUAUUUCCGAAUCAGAGUCGCAGUCAUUAAGUCUGCUCGAUGUUUUUGCAUCGAUUCUUC---AGGUCCAGAGUCUUCACUCUCCAGUCUUCGCU .................((((..((((((((((.(.....).))))..(((((....)))))))))))..---.((...(((((....)))))))....)))).. ( -24.00, z-score = -3.13, R) >droSec1.super_1 10887258 102 + 14215200 AUUCCCAUCAUUAUUUCCGAAUCAGAGUCGCAGUCAUUAAGUCUACUCGAUGUUUUUGCAUCGAUUCUUC---AGGUCCGGAGUCUUCACUCUCCAGUCUUCGCU ..................(((((.((((...((.(.....).))))))(((((....))))))))))...---(((.(.((((........)))).).))).... ( -20.70, z-score = -1.76, R) >droYak2.chr2R 3061367 93 - 21139217 AUUCCCAUCAUUAUUUCCGAAUCAGAGUUGCAGUCAUUAAGUCUGCUCGGUGUUUUUGCAUCGAUUCUUCUCCAGGUUCAGAGUCUUCACUCU------------ ..................(((((.(((..((((.(.....).))))(((((((....))))))).....)))..)))))(((((....)))))------------ ( -22.90, z-score = -3.32, R) >droEre2.scaffold_4845 10120304 94 - 22589142 AUUCCCAUCAUUAUUUCCGAAUCAGAGUCGCAGUCAUUAAGUCUGCUCGGUGUUUUUGCAUCGAUUCUUC---AGGUCC--AGUCUUC------CAGUCUUCGCA .................((((..((((((((((.(.....).))))..(((((....)))))))))))..---.((...--......)------)....)))).. ( -18.90, z-score = -2.50, R) >dp4.chr3 4838916 80 + 19779522 AUUCCCAUCAUUAUAUCUGAAUCAAAGUCUCGGCCAUUAAGUCUGUUCGGUGCUUUUGCAUCAAUUUUUUCCAUCGUUCC------------------------- ..................((((.........(((......))).....(((((....))))).............)))).------------------------- ( -8.70, z-score = -0.46, R) >droPer1.super_2 5032875 80 + 9036312 AUUCCCAUCAUUAUAUCUGAAUCAAAGUCUCGGCCAUUAAGUCUGUUCGGUGCUUUUGCAUCAAUUUUUUUCAUCGUUCC------------------------- .................((((..(((.....(((......))).....(((((....)))))..)))..)))).......------------------------- ( -9.60, z-score = -0.93, R) >consensus AUUCCCAUCAUUAUUUCCGAAUCAGAGUCGCAGUCAUUAAGUCUGCUCGGUGUUUUUGCAUCGAUUCUUC___AGGUCCAGAGUCUUCACUCU__AGUCUUCGC_ .......................((((((((((.(.....).))))..(((((....)))))))))))..................................... (-12.45 = -12.03 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:58 2011