| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,388,885 – 13,388,981 |
| Length | 96 |
| Max. P | 0.871803 |
| Location | 13,388,885 – 13,388,981 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 95.80 |
| Shannon entropy | 0.05739 |
| G+C content | 0.61259 |
| Mean single sequence MFE | -33.47 |
| Consensus MFE | -32.83 |
| Energy contribution | -32.83 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.871803 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13388885 96 + 21146708 UUCCUUGGGUUCAUGGAAGUGCCAGUGGCGGUGGCAGUGGUAGUGGCAGUGGCGUGGGCUCACAGGGUUAACUGAUGGGGGUUCUCGCGAGGGGGG .((((((((((((((..(.(((((.((.((.......)).)).))))).)..))))))))).(((......)))..)))))(((((....))))). ( -35.00, z-score = -1.68, R) >droSim1.chr2R 12125502 94 + 19596830 UUCCUUGGGUUCAUGGAAGUGCCAGUGGCGGUGGCAGUGGUAGUGGCAGUGGCGUGGGCUCACAGGGUAUUCUGAUGGGGGUUCUCGAGAGGGG-- .((((((((((((((..(.(((((.((.((.......)).)).))))).)..)))))))))...(((.(((((....))))).)))..))))).-- ( -32.70, z-score = -1.34, R) >droSec1.super_1 10885010 94 + 14215200 UUCCUUGGGUUCAUGGAAGUGCCAGUGGCGGUGGCAGUGGUAGUGGCAGUGGCGUGGGCUCACAGGGUAUUCUGAUGGGGGUUCUCGAGAGGGG-- .((((((((((((((..(.(((((.((.((.......)).)).))))).)..)))))))))...(((.(((((....))))).)))..))))).-- ( -32.70, z-score = -1.34, R) >consensus UUCCUUGGGUUCAUGGAAGUGCCAGUGGCGGUGGCAGUGGUAGUGGCAGUGGCGUGGGCUCACAGGGUAUUCUGAUGGGGGUUCUCGAGAGGGG__ .((((((((((((((..(.(((((.((.((.......)).)).))))).)..))))))))).(((......)))..))))).((((....)))).. (-32.83 = -32.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:57 2011