| Sequence ID | dm3.chr2R |
|---|---|
| Location | 13,384,668 – 13,384,725 |
| Length | 57 |
| Max. P | 0.940714 |
| Location | 13,384,668 – 13,384,725 |
|---|---|
| Length | 57 |
| Sequences | 6 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 92.44 |
| Shannon entropy | 0.14569 |
| G+C content | 0.58903 |
| Mean single sequence MFE | -22.87 |
| Consensus MFE | -19.67 |
| Energy contribution | -20.28 |
| Covariance contribution | 0.61 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.47 |
| SVM RNA-class probability | 0.940714 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 13384668 57 + 21146708 GGAAAUGGGGGCGGGUCAGCGGGAGCUGGCAUGUAAUUAUG-UGGCCCCAUAUACCGC ((..((((((.(....((((....))))(((((....))))-)).))))))...)).. ( -24.20, z-score = -2.43, R) >droAna3.scaffold_13266 8869704 58 + 19884421 GGAAAAUGGGGCGGUGCAGCGGGAGCUGGCAUGUAAUUAUGGUGGCCCGGUAAAAAGU .....((.((((....((((....)))).((((....))))...)))).))....... ( -18.40, z-score = -2.24, R) >droEre2.scaffold_4845 10113999 57 - 22589142 GGAAAUGGGGGCGGGUCAGCGGGAGCCGGCAUGUAAUUAUG-UGGCCCCAUAUACCGC ((..((((((.(((.((.....)).)).(((((....))))-)).))))))...)).. ( -21.60, z-score = -0.96, R) >droYak2.chr2R 3054904 57 - 21139217 GGAAAUGGGGGCGGGUCAGCGGGAGCUGACAUGUAAUUAUG-UGGCCCCAUAUACCGC ((..((((((.((.((((((....))))))(((....))).-)).))))))...)).. ( -24.60, z-score = -3.04, R) >droSec1.super_1 10880876 57 + 14215200 GGAAAUGGGGGCGGGUCAGCGGGAGCUGGCAUGUAAUUAUG-UGGCCCCAUAUACCGC ((..((((((.(....((((....))))(((((....))))-)).))))))...)).. ( -24.20, z-score = -2.43, R) >droSim1.chr2R 12121336 57 + 19596830 GGAAAUGGGGGCGGGUCAGCGGGAGCUGGCAUGUAAUUAUG-UGGCCCCAUAUACCGC ((..((((((.(....((((....))))(((((....))))-)).))))))...)).. ( -24.20, z-score = -2.43, R) >consensus GGAAAUGGGGGCGGGUCAGCGGGAGCUGGCAUGUAAUUAUG_UGGCCCCAUAUACCGC ((..((((((.((.((((((....))))))(((....)))..)).))))))...)).. (-19.67 = -20.28 + 0.61)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:29:57 2011